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Spg035182 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035182
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:24547749..24550640
RNA-Seq ExpressionSpg035182
SyntenySpg035182
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]6.5e-1265Show/hide
Query:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS
        RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  S+S+TW+ELY ESV+   + ++ +
Subjt:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.0e-1375.44Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LFY
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY
KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]1.4e-1174Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]6.5e-1270.69Show/hide
Query:  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        + + +   PRGNR SLQTRELDKT  IELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.2e-1268.85Show/hide
Query:  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        I + + F    PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein3.1e-1265Show/hide
Query:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS
        RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  S+S+TW+ELY ESV+   + ++ +
Subjt:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVS
A0A5A7UAH6 CCHC-type domain-containing protein9.8e-1475.44Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LFY
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFY
A0A5A7V2F2 Uncharacterized protein7.0e-1274Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
A0A5D3BET3 Uncharacterized protein1.1e-1268.85Show/hide
Query:  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        I + + F    PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  IGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
A0A5D3DWP3 Uncharacterized protein3.1e-1270.69Show/hide
Query:  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        + + +   PRGNR SLQTRELDKT  IELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  ESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTCTTCAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGG
AAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATA
CGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCTACGTTTCAGGAGGGTCAACGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGT
CCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGTCTTCAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGG
AAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACGGTAGAGATCGAGCTCCCGGTGCCTGACACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATA
CGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCTACGTTTCAGGAGGGTCAACGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGT
CCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MRGLQGSREPRICVVCVRGNSGQIGWESRFHFFRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFYVSGGSTDVGSVQIELAEYG
PSIVESESSQD