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Spg035193 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035193
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:24003523..24005551
RNA-Seq ExpressionSpg035193
SyntenySpg035193
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]4.6e-1149.5Show/hide
Query:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        +S  E  + PRGN  SLQT +L KT          +      VEI+LPV DTLP SAESS S+S S         + EDDV WLH +FR K AGGPGGGV
Subjt:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  T
        T
Subjt:  T

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1048.51Show/hide
Query:  PRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGN  SLQT +L KT          +      VEI+LP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-1343.51Show/hide
Query:  FGLSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ-----------------------------
        FGL Y EGTKRPRGN +SLQT +L KT          +      VEI+LPVPDTLPTSAESS S+SS+  +                             
Subjt:  FGLSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ-----------------------------

Query:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
         G    +  D+V WLHA+F  K AGGPGGGV
Subjt:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.7e-1455.1Show/hide
Query:  RPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTFYALK
        RPRGN  SLQT KL KT          +      VEI+LPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGGPGGGVTF   K
Subjt:  RPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTFYALK

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]5.4e-1241.73Show/hide
Query:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRV
        +S  E  + PRGN SSLQT +L KT          ++     VEI+LPVPDTLPTSAES  S+SS+  +                          EG   
Subjt:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRV

Query:  SLEEDDVRWLHAIFRTKLAGGPGGGVT
         +  DDV WLH +FR K+AGGPGGGVT
Subjt:  SLEEDDVRWLHAIFRTKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.9e-1148.51Show/hide
Query:  PRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGN  SLQT +L KT          +      VEI+LP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.4e-1343.51Show/hide
Query:  FGLSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ-----------------------------
        FGL Y EGTKRPRGN +SLQT +L KT          +      VEI+LPVPDTLPTSAESS S+SS+  +                             
Subjt:  FGLSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ-----------------------------

Query:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
         G    +  D+V WLHA+F  K AGGPGGGV
Subjt:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

A0A5A7VIY9 Uncharacterized protein2.6e-1241.73Show/hide
Query:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRV
        +S  E  + PRGN SSLQT +L KT          ++     VEI+LPVPDTLPTSAES  S+SS+  +                          EG   
Subjt:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRV

Query:  SLEEDDVRWLHAIFRTKLAGGPGGGVT
         +  DDV WLH +FR K+AGGPGGGVT
Subjt:  SLEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.8e-1455.1Show/hide
Query:  RPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTFYALK
        RPRGN  SLQT KL KT          +      VEI+LPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGGPGGGVTF   K
Subjt:  RPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTFYALK

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.2e-1149.5Show/hide
Query:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        +S  E  + PRGN  SLQT +L KT          +      VEI+LPV DTLP SAESS S+S S         + EDDV WLH +FR K AGGPGGGV
Subjt:  LSYTEGTKRPRGNSSSLQTRKLAKTP-------EAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  T
        T
Subjt:  T

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATAGCTGAAGCAAAGGTAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAA
TAGTTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATGGCACCGTGTGCACACAGTAGAGATCAAGCTCCCAGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCA
GGTGGTCCGGGAGGGGGTGTGACATTTTATGCCCTAAAACTCGTAGATAGTAAATGTAACAATTGA
mRNA sequenceShow/hide mRNA sequence
GAAATAGCTGAAGCAAAGGTAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAA
TAGTTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATGGCACCGTGTGCACACAGTAGAGATCAAGCTCCCAGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCA
GGTGGTCCGGGAGGGGGTGTGACATTTTATGCCCTAAAACTCGTAGATAGTAAATGTAACAATTGA
Protein sequenceShow/hide protein sequence
EIAEAKVAIAEAEFNLSTSGFCFGLSYTEGTKRPRGNSSSLQTRKLAKTPEAIWHRVHTVEIKLPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLA
GGPGGGVTFYALKLVDSKCNN