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Spg035200 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035200
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:24603426..24614838
RNA-Seq ExpressionSpg035200
SyntenySpg035200
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2053.57Show/hide
Query:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC
        L TLSVL DNDAVV           SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESV++     V 
Subjt:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC

Query:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG
        L     Q     S   +  DDV WLHAIFR K AGG GGG
Subjt:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.8e-2959.03Show/hide
Query:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY
        SL TLSVLRDNDAVVSA GPHYDKD G+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S         S  
Subjt:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY

Query:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        IV                      DDV WLH +FR K  GG GG
Subjt:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.8e-2959.03Show/hide
Query:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY
        SL TLSVLRDNDAVVSA GPHYDKD G+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S         S  
Subjt:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY

Query:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        IV                      DDV WLH +FR K  GG GG
Subjt:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2053.57Show/hide
Query:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC
        L TLSVL DNDAVV           SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESV++     V 
Subjt:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC

Query:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG
        L     Q     S   +  DDV WLHAIFR K AGG GGG
Subjt:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.6e-1643.23Show/hide
Query:  WVVQVVSEALFGYI------SLLTLSVLRDNDAVVSAG-PHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSST
        ++ +++S  L+G +       L TLSVLRDNDAVVS G  HYDKD G  G    H       +             +EIEL VPDTLPTSAESS S+SST
Subjt:  WVVQVVSEALFGYI------SLLTLSVLRDNDAVVSAG-PHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSST

Query:  WVELYIESVYIVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        W+E   E  Y  + +    S   ++      + E+DV WLHA+FR K+AGG GGG
Subjt:  WVELYIESVYIVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.9e-2153.57Show/hide
Query:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC
        L TLSVL DNDAVV           SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESV++     V 
Subjt:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC

Query:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG
        L     Q     S   +  DDV WLHAIFR K AGG GGG
Subjt:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG

A0A5A7VGQ5 Uncharacterized protein1.4e-2959.03Show/hide
Query:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY
        SL TLSVLRDNDAVVSA GPHYDKD G+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S         S  
Subjt:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY

Query:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        IV                      DDV WLH +FR K  GG GG
Subjt:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3BG85 Uncharacterized protein1.4e-2959.03Show/hide
Query:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY
        SL TLSVLRDNDAVVSA GPHYDKD G+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S         S  
Subjt:  SLLTLSVLRDNDAVVSA-GPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVY

Query:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        IV                      DDV WLH +FR K  GG GG
Subjt:  IVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3BTP3 Reverse transcriptase8.9e-2153.57Show/hide
Query:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC
        L TLSVL DNDAVV           SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESV++     V 
Subjt:  LLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLVC

Query:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG
        L     Q     S   +  DDV WLHAIFR K AGG GGG
Subjt:  LSGSTFQKGQRVS---LEEDDVRWLHAIFRTKLAGGLGGG

A0A5D3CAC6 Uncharacterized protein1.7e-1643.23Show/hide
Query:  WVVQVVSEALFGYI------SLLTLSVLRDNDAVVSAG-PHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSST
        ++ +++S  L+G +       L TLSVLRDNDAVVS G  HYDKD G  G    H       +             +EIEL VPDTLPTSAESS S+SST
Subjt:  WVVQVVSEALFGYI------SLLTLSVLRDNDAVVSAG-PHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSST

Query:  WVELYIESVYIVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        W+E   E  Y  + +    S   ++      + E+DV WLHA+FR K+AGG GGG
Subjt:  WVELYIESVYIVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGTATCAGAAGC
TCTATTTGGTTATATTTCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCCCCACTACGACAAAGACGGTGGGAGTGCTGGGCGGGCCC
CACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACTCTGCCAACG
TCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTATTAGTATGTTTATCGGGTTCTACGTTTCAGAA
GGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCCGGTGGTCTGGGAGGGGGATACCCCCGCTCGCATGTCTCCT
ACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAGCGGGTCGTATCACATAGTGTTACCAGGATAAGTTTGGAACACAAAGTTCGGCACAAGGAGACGACTTCA
GGTGGTTTGGACGACACATGGTCCAAACTGTGCTCCGTTGGAGTTTTGGAGATTTTGGAACACAACGTTCGGACCAATGAGATATCTTTAGGTAGATTGGACGAAGATGG
TCAAAACTTTACACCGTTAGAGTTTTCGAGAGTTTGGAACACAAAGTTCGACCCAATGAGAGGTCTTCAGAAGGATCTCTGGTTTTCTCTTGTTTTTCGAGCTTTATGGG
GTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTATAACTTTCATGAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTC
TGTGTTCGGGGCATTTTTGGACAAATTGGTTGGCCAAGAGGAAATAGATCGAGTCTACGGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCTGTGCCGTATAC
ACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGAAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTC
GGACTAAGAGTTTTGAACACAAAGTTCGGCCTAATGAGTGGTCTTCAGGTGGTTTGGACGATACATGGTCCAAACTTTGCTCTGTTCGAGTTTTGGAGAGTTTGGAACAA
AAAGTTCGGTCCAATGAGAGATCTTTAGGTGGTTTGGACGAAGATGGTCCAAACTTTGCTGCGTTTGAGTTTTCGAGAGTTTTGAACACAAAGTTCGGCCCTATGGGACG
TCTTCTGGTGGTTTGGACGACACATGGTCCAAACTTTGCTCCCATTGAGTGTTGGAGAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGTATCAGAAGC
TCTATTTGGTTATATTTCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCCCCACTACGACAAAGACGGTGGGAGTGCTGGGCGGGCCC
CACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACTCTGCCAACG
TCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTATTAGTATGTTTATCGGGTTCTACGTTTCAGAA
GGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCCGGTGGTCTGGGAGGGGGATACCCCCGCTCGCATGTCTCCT
ACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAGCGGGTCGTATCACATAGTGTTACCAGGATAAGTTTGGAACACAAAGTTCGGCACAAGGAGACGACTTCA
GGTGGTTTGGACGACACATGGTCCAAACTGTGCTCCGTTGGAGTTTTGGAGATTTTGGAACACAACGTTCGGACCAATGAGATATCTTTAGGTAGATTGGACGAAGATGG
TCAAAACTTTACACCGTTAGAGTTTTCGAGAGTTTGGAACACAAAGTTCGACCCAATGAGAGGTCTTCAGAAGGATCTCTGGTTTTCTCTTGTTTTTCGAGCTTTATGGG
GTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTATAACTTTCATGAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTC
TGTGTTCGGGGCATTTTTGGACAAATTGGTTGGCCAAGAGGAAATAGATCGAGTCTACGGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCTGTGCCGTATAC
ACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGAAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTC
GGACTAAGAGTTTTGAACACAAAGTTCGGCCTAATGAGTGGTCTTCAGGTGGTTTGGACGATACATGGTCCAAACTTTGCTCTGTTCGAGTTTTGGAGAGTTTGGAACAA
AAAGTTCGGTCCAATGAGAGATCTTTAGGTGGTTTGGACGAAGATGGTCCAAACTTTGCTGCGTTTGAGTTTTCGAGAGTTTTGAACACAAAGTTCGGCCCTATGGGACG
TCTTCTGGTGGTTTGGACGACACATGGTCCAAACTTTGCTCCCATTGAGTGTTGGAGAGTTTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFRAFWVVQVVSEALFGYISLLTLSVLRDNDAVVSAGPHYDKDGGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPT
SAESSRSSSSTWVELYIESVYIVNVLLVCLSGSTFQKGQRVSLEEDDVRWLHAIFRTKLAGGLGGGYPRSHVSYMDALDQYVCIEYKRVVSHSVTRISLEHKVRHKETTS
GGLDDTWSKLCSVGVLEILEHNVRTNEISLGRLDEDGQNFTPLEFSRVWNTKFDPMRGLQKDLWFSLVFRALWGVQVESEALFGMVGNLIQFPITFMKIKGSREPRICVV
CVRGIFGQIGWPRGNRSSLRTRKLAKTVEIELPVPYTLPTSAESSRSSSSSTFQKGQQVSLEEDDVRWLHAIFRTKSFEHKVRPNEWSSGGLDDTWSKLCSVRVLESLEQ
KVRSNERSLGGLDEDGPNFAAFEFSRVLNTKFGPMGRLLVVWTTHGPNFAPIECWRV