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Spg035215 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035215
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:23706456..23710831
RNA-Seq ExpressionSpg035215
SyntenySpg035215
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1041.03Show/hide
Query:  PLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLSTSAESSRTSSISLE
        PL TLSVL DNDAVVSAG A                          PL +R   RW     PT    +  S  LVEIELPVPD L TSAESSR++S +  
Subjt:  PLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLSTSAESSRTSSISLE

Query:  E----------------------------------DDVRWLHAIFRAKLAGGPGGG
        E                                  DDV WLHAIFRAK AGGPGGG
Subjt:  E----------------------------------DDVRWLHAIFRAKLAGGPGGG

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1464Show/hide
Query:  GYIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE
        GYI LLTLSVLRDN+ VVS              + R    K DGSAGRTPLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.9e-3062.79Show/hide
Query:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS
        L TLSVLRDNDAVVSAG               PHYDK DG+A R PLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL TSAESS ++
Subjt:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS

Query:  SIS---LEEDDVRWLHAIFRAKLAGGPGG
        S S   +  DDV WLH +FRAK  GGPGG
Subjt:  SIS---LEEDDVRWLHAIFRAKLAGGPGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.9e-3062.79Show/hide
Query:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS
        L TLSVLRDNDAVVSAG               PHYDK DG+A R PLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL TSAESS ++
Subjt:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS

Query:  SIS---LEEDDVRWLHAIFRAKLAGGPGG
        S S   +  DDV WLH +FRAK  GGPGG
Subjt:  SIS---LEEDDVRWLHAIFRAKLAGGPGG

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]1.6e-1259.46Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE
        YI LLTLSVLRDN+ ++S              + R    K DGSAGRTPLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE

TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.8e-1564Show/hide
Query:  GYIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE
        GYI LLTLSVLRDN+ VVS              + R    K DGSAGRTPLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  GYIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein1.4e-3062.79Show/hide
Query:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS
        L TLSVLRDNDAVVSAG               PHYDK DG+A R PLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL TSAESS ++
Subjt:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS

Query:  SIS---LEEDDVRWLHAIFRAKLAGGPGG
        S S   +  DDV WLH +FRAK  GGPGG
Subjt:  SIS---LEEDDVRWLHAIFRAKLAGGPGG

A0A5D3BG85 Uncharacterized protein1.4e-3062.79Show/hide
Query:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS
        L TLSVLRDNDAVVSAG               PHYDK DG+A R PLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTL TSAESS ++
Subjt:  LLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLSTSAESSRTS

Query:  SIS---LEEDDVRWLHAIFRAKLAGGPGG
        S S   +  DDV WLH +FRAK  GGPGG
Subjt:  SIS---LEEDDVRWLHAIFRAKLAGGPGG

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein7.7e-1359.46Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE
        YI LLTLSVLRDN+ ++S              + R    K DGSAGRTPLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5D3BTP3 Reverse transcriptase7.2e-1141.03Show/hide
Query:  PLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLSTSAESSRTSSISLE
        PL TLSVL DNDAVVSAG A                          PL +R   RW     PT    +  S  LVEIELPVPD L TSAESSR++S +  
Subjt:  PLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLSTSAESSRTSSISLE

Query:  E----------------------------------DDVRWLHAIFRAKLAGGPGGG
        E                                  DDV WLHAIFRAK AGGPGGG
Subjt:  E----------------------------------DDVRWLHAIFRAKLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCTGTTCGTGGTCGGTACCGCAAGCGCACGGTATCG
CAAGGCCCCACTACGACAAAGGCGATGGGAGTGCTGGGCGGACCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGTCCTACACAACGTAGATCAGTC
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCATATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGGGCATCCGGAACGAACTACACAAATTGGAGCTAATTCGGGCAATTTAGAGAGTTTTCGAGCTAACTTGAGGG
TCATGGATCTCGAAGTGGTGAGAAAACCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCTGTTCGTGGTCGGTACCGCAAGCGCACGGTATCG
CAAGGCCCCACTACGACAAAGGCGATGGGAGTGCTGGGCGGACCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGTCCTACACAACGTAGATCAGTC
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCATATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGGGCATCCGGAACGAACTACACAAATTGGAGCTAATTCGGGCAATTTAGAGAGTTTTCGAGCTAACTTGAGGG
TCATGGATCTCGAAGTGGTGAGAAAACCGTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFRAFWVVQVESEALFGYIPLLTLSVLRDNDAVVSAGWACSWSVPQAHGIARPHYDKGDGSAGRTPLHRRTSKRWLYWACPTQRRSV
MLVEIELPVPDTLSTSAESSRTSSISLEEDDVRWLHAIFRAKLAGGPGGGHPERTTQIGANSGNLESFRANLRVMDLEVVRKP