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Spg035220 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035220
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:23863406..23865233
RNA-Seq ExpressionSpg035220
SyntenySpg035220
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]6.2e-2053.39Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES
        +YKLNQKLYLVSC VFENEE  VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTS ES
Subjt:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES

Query:  SRSSSSTWLELYIESVHI
        SRS+SSTWLELY E VH+
Subjt:  SRSSSSTWLELYIESVHI

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]4.7e-2046.58Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIW-----------VQTHSGVYKLNQKLYLVSCRV
        TKPTTD  IFQ NFI FLHHF  KLSE F+ERVK EEEEEFRGLRLKK+ K           +   +W                G     Q   L    +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIW-----------VQTHSGVYKLNQKLYLVSCRV

Query:  FENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSSSTWLELYIESVHI
        F+   L V   N   ++        +VEIELP+PDTLPT  ES  S+SSTWLELY ESVH+
Subjt:  FENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSSSTWLELYIESVHI

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]5.8e-1851.69Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES
        V++ NQ LYLVSCRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES

Query:  SRSSSSTWLELYIESVHI
        S S+SSTWLELYIESVH+
Subjt:  SRSSSSTWLELYIESVHI

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.0e-1446.36Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTHS--GVYKLNQKLYL---------------VS
        TKPTT   IFQ NFISFLHHFP KL E+FEERVK EEEEEFR ++ +   +S   S K     ++    S   V+K NQKLYL                +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTHS--GVYKLNQKLYL---------------VS

Query:  CRVFENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSS
            +  ELD   I   S L  L   +  VEIELPVPD LPTS +SS S+S
Subjt:  CRVFENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.9e-2239.11Show/hide
Query:  IFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------
        +FQPNFISFLHHFP KLSE+FEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    S                 V K NQKLY               
Subjt:  IFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------

Query:  ------------------------LVSCRVFENEELDVYF--------------------------------------INFGSVLRKLWVLEVRVEIELP
                                ++S R++      V F                                      +N G   R L  ++  +EIEL 
Subjt:  ------------------------LVSCRVFENEELDVYF--------------------------------------INFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSVESSRSSSSTWLELYIE
        VPDTLPTS ESS S+SSTWLE   E
Subjt:  VPDTLPTSVESSRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein3.0e-2053.39Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES
        +YKLNQKLYLVSC VFENEE  VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTS ES
Subjt:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES

Query:  SRSSSSTWLELYIESVHI
        SRS+SSTWLELY E VH+
Subjt:  SRSSSSTWLELYIESVHI

A0A5A7UGD0 Uncharacterized protein2.3e-2046.58Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIW-----------VQTHSGVYKLNQKLYLVSCRV
        TKPTTD  IFQ NFI FLHHF  KLSE F+ERVK EEEEEFRGLRLKK+ K           +   +W                G     Q   L    +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCK------ASHCRIW-----------VQTHSGVYKLNQKLYLVSCRV

Query:  FENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSSSTWLELYIESVHI
        F+   L V   N   ++        +VEIELP+PDTLPT  ES  S+SSTWLELY ESVH+
Subjt:  FENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSSSTWLELYIESVHI

A0A5A7V5Z6 Uncharacterized protein2.8e-1851.69Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES
        V++ NQ LYLVSCRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSVES

Query:  SRSSSSTWLELYIESVHI
        S S+SSTWLELYIESVH+
Subjt:  SRSSSSTWLELYIESVHI

A0A5D3BZ50 Pentatricopeptide repeat-containing protein1.4e-1446.36Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTHS--GVYKLNQKLYL---------------VS
        TKPTT   IFQ NFISFLHHFP KL E+FEERVK EEEEEFR ++ +   +S   S K     ++    S   V+K NQKLYL                +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTHS--GVYKLNQKLYL---------------VS

Query:  CRVFENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSS
            +  ELD   I   S L  L   +  VEIELPVPD LPTS +SS S+S
Subjt:  CRVFENEELDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSVESSRSSS

A0A5D3CAC6 Uncharacterized protein1.9e-2239.11Show/hide
Query:  IFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------
        +FQPNFISFLHHFP KLSE+FEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    S                 V K NQKLY               
Subjt:  IFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSG----------------VYKLNQKLY---------------

Query:  ------------------------LVSCRVFENEELDVYF--------------------------------------INFGSVLRKLWVLEVRVEIELP
                                ++S R++      V F                                      +N G   R L  ++  +EIEL 
Subjt:  ------------------------LVSCRVFENEELDVYF--------------------------------------INFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSVESSRSSSSTWLELYIE
        VPDTLPTS ESS S+SSTWLE   E
Subjt:  VPDTLPTSVESSRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGAACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTGGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAA
GTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATAT
TGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGAACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTGGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAA
GTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATAT
TGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSENFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTHSGVYKLNQKLYLVSCRVFENEELDVYFINFGSVLRKLWVLE
VRVEIELPVPDTLPTSVESSRSSSSTWLELYIESVHIVNVL