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Spg035222 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035222
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:24552633..24563474
RNA-Seq ExpressionSpg035222
SyntenySpg035222
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.7e-2051.11Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+  VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKL
        S S+SS        S GIVRGDDVCWLHAVFRAK+
Subjt:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-1935.4Show/hide
Query:  KTHH-RLQFSSAHFHLISHPFPLKLSEHFKEGVKEEEEEEFLGLRLKKIGNSSCKTSHCRI-----CVQPVNLWCFSR----FELHRRDQE--------H
        K HH +L     +F    H FP KLSEHF+E VK EEEEEF GLRLKKIG SSCK +HCRI       +P     FS      E+ + +Q+         
Subjt:  KTHH-RLQFSSAHFHLISHPFPLKLSEHFKEGVKEEEEEEFLGLRLKKIGNSSCKTSHCRI-----CVQPVNLWCFSR----FELHRRDQE--------H

Query:  SGVYK----------------------------LNQKLYLVSCR-----------VFENEEV--------------------DVYCINFGSVLRKLWVLE
        SG +                             L+ +LY   C            + +N+ V                     V  +N G   R L  ++
Subjt:  SGVYK----------------------------LNQKLYLVSCR-----------VFENEEV--------------------DVYCINFGSVLRKLWVLE

Query:  VRVEIELPVPDTLPTSAESSRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLA
          +EIEL VPDTLPTSAESS S+SSTW                       V S GIVR +DVCWLHAVFRAK+A
Subjt:  VRVEIELPVPDTLPTSAESSRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLA

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.2e-1747.06Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K  QKLYLVSCRV ENE+  VY IN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA
             +  +    GS GIVRGDDVCWLHAV RAK+A
Subjt:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.2e-1648.8Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEVDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------F
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SSTW                           F
Subjt:  VYKLNQKLYL------VSCRVFENEEVDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------F

Query:  NVSVGSTGIVRGDDVCWLHAVFRAK
        NVSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  NVSVGSTGIVRGDDVCWLHAVFRAK

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]2.4e-1946.41Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------
        V+K NQKLYLVSCRVFENE   VY INFG VLRKLWVLE R                                                           
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------

Query:  VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA
        VEIELPVPDTLPTSAES        F  +  S GIVRGDDVCWLHAVFRAK A
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA

TrEMBL top hitse value%identityAlignment
A0A5D3BQ75 Uncharacterized protein8.0e-2151.11Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+  VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKL
        S S+SS        S GIVRGDDVCWLHAVFRAK+
Subjt:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKL

A0A5D3CAC6 Uncharacterized protein8.9e-2035.4Show/hide
Query:  KTHH-RLQFSSAHFHLISHPFPLKLSEHFKEGVKEEEEEEFLGLRLKKIGNSSCKTSHCRI-----CVQPVNLWCFSR----FELHRRDQE--------H
        K HH +L     +F    H FP KLSEHF+E VK EEEEEF GLRLKKIG SSCK +HCRI       +P     FS      E+ + +Q+         
Subjt:  KTHH-RLQFSSAHFHLISHPFPLKLSEHFKEGVKEEEEEEFLGLRLKKIGNSSCKTSHCRI-----CVQPVNLWCFSR----FELHRRDQE--------H

Query:  SGVYK----------------------------LNQKLYLVSCR-----------VFENEEV--------------------DVYCINFGSVLRKLWVLE
        SG +                             L+ +LY   C            + +N+ V                     V  +N G   R L  ++
Subjt:  SGVYK----------------------------LNQKLYLVSCR-----------VFENEEV--------------------DVYCINFGSVLRKLWVLE

Query:  VRVEIELPVPDTLPTSAESSRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLA
          +EIEL VPDTLPTSAESS S+SSTW                       V S GIVR +DVCWLHAVFRAK+A
Subjt:  VRVEIELPVPDTLPTSAESSRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLA

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.1e-1747.06Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K  QKLYLVSCRV ENE+  VY IN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA
             +  +    GS GIVRGDDVCWLHAV RAK+A
Subjt:  SRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA

A0A5D3CJX3 CCHC-type domain-containing protein1.6e-1648.8Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEVDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------F
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SSTW                           F
Subjt:  VYKLNQKLYL------VSCRVFENEEVDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW---------------------------F

Query:  NVSVGSTGIVRGDDVCWLHAVFRAK
        NVSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  NVSVGSTGIVRGDDVCWLHAVFRAK

A0A5D3CSJ5 Putative polyprotein1.2e-1946.41Show/hide
Query:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------
        V+K NQKLYLVSCRVFENE   VY INFG VLRKLWVLE R                                                           
Subjt:  VYKLNQKLYLVSCRVFENEEVDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------

Query:  VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA
        VEIELPVPDTLPTSAES        F  +  S GIVRGDDVCWLHAVFRAK A
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAGAAAAAAGAAAGAAAAAGAAAGCAAATGGAAATGGCCAGCACTAAAAACCCACCACCGACTACAATTTTCATCAGCCCATTTCCATCTCATTTCTCATCCTTTTCC
ATTGAAACTTTCAGAGCACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAACAGCTCATGCAAAACCAGCCATT
GCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGCATTCTGGGGTCTACAAGTTGAATCAGAAGCTCTATTTG
GTAAGTTGTAGAGTGTTCGAAAATGAAGAGGTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCC
GGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGAGCACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAACAGC
TCATGCAAAACCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTACGTTGTAGAGTGTTCGA
AAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCACGGCGGGTTTTGCTGCAGCACACGATTCTGTTGGGGGTTCGCTAGACCTTCAGGACCCTGCGGTAGATGCGGCACGTCAGCCATTT
GATTTTGCTGTCTACGCTGCTCTCTCCTTCTTATCCTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGAAAAAAGAAAGAAAAAGAAAGCAAATGGAAATGGCCAGCACTAAAAACCCACCACCGACTACAATTTTCATCAGCCCATTTCCATCTCATTTCTCATCCTTTTCC
ATTGAAACTTTCAGAGCACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAACAGCTCATGCAAAACCAGCCATT
GCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGCATTCTGGGGTCTACAAGTTGAATCAGAAGCTCTATTTG
GTAAGTTGTAGAGTGTTCGAAAATGAAGAGGTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCC
GGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGAGCACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAACAGC
TCATGCAAAACCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTACGTTGTAGAGTGTTCGA
AAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCACGGCGGGTTTTGCTGCAGCACACGATTCTGTTGGGGGTTCGCTAGACCTTCAGGACCCTGCGGTAGATGCGGCACGTCAGCCATTT
GATTTTGCTGTCTACGCTGCTCTCTCCTTCTTATCCTGA
Protein sequenceShow/hide protein sequence
KRKKKEKESKWKWPALKTHHRLQFSSAHFHLISHPFPLKLSEHFKEGVKEEEEEEFLGLRLKKIGNSSCKTSHCRICVQPVNLWCFSRFELHRRDQEHSGVYKLNQKLYL
VSCRVFENEEVDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAEHFKEGVKEEEEEEFLGLRLKKIGNS
SCKTSHCRICVQPVNLWCFSRFELHRRDQEVRCRVFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSTAGFAAAHDSVGGSLDLQDPAVDAARQPF
DFAVYAALSFLS