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Spg035228 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035228
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:24866216..24872524
RNA-Seq ExpressionSpg035228
SyntenySpg035228
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-1348.36Show/hide
Query:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL
        SAG+APL +R   RW     PT     M    LVEIEL VPD LPTS ESSRS+SS+  +   E   V +                        DDV WL
Subjt:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL

Query:  HAIFRTKLAGGPGGGVTTWYQS
        HAIFR K AGGPGGGVTTWYQS
Subjt:  HAIFRTKLAGGPGGGVTTWYQS

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.3e-2563.21Show/hide
Query:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG
        PHYDKDDG+A RAPLHRRTSKRWLYW CPT RR VML          VEIEL VPDTLPTS ESS S+S S         +  DDV WLH +FR K  GG
Subjt:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  PGGGVT
        PGG VT
Subjt:  PGGGVT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.3e-2563.21Show/hide
Query:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG
        PHYDKDDG+A RAPLHRRTSKRWLYW CPT RR VML          VEIEL VPDTLPTS ESS S+S S         +  DDV WLH +FR K  GG
Subjt:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  PGGGVT
        PGG VT
Subjt:  PGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-1348.36Show/hide
Query:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL
        SAG+APL +R   RW     PT     M    LVEIEL VPD LPTS ESSRS+SS+  +   E   V +                        DDV WL
Subjt:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL

Query:  HAIFRTKLAGGPGGGVTTWYQS
        HAIFR K AGGPGGGVTTWYQS
Subjt:  HAIFRTKLAGGPGGGVTTWYQS

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]4.6e-1061.54Show/hide
Query:  LVEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        +VEIEL V DTLPTS ESS S+S S         +  DDV WLH++FR K A GPGGGVTTWYQS
Subjt:  LVEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.8e-1348.36Show/hide
Query:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL
        SAG+APL +R   RW     PT     M    LVEIEL VPD LPTS ESSRS+SS+  +   E   V +                        DDV WL
Subjt:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL

Query:  HAIFRTKLAGGPGGGVTTWYQS
        HAIFR K AGGPGGGVTTWYQS
Subjt:  HAIFRTKLAGGPGGGVTTWYQS

A0A5A7VGQ5 Uncharacterized protein6.5e-2663.21Show/hide
Query:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG
        PHYDKDDG+A RAPLHRRTSKRWLYW CPT RR VML          VEIEL VPDTLPTS ESS S+S S         +  DDV WLH +FR K  GG
Subjt:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  PGGGVT
        PGG VT
Subjt:  PGGGVT

A0A5D3BG85 Uncharacterized protein6.5e-2663.21Show/hide
Query:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG
        PHYDKDDG+A RAPLHRRTSKRWLYW CPT RR VML          VEIEL VPDTLPTS ESS S+S S         +  DDV WLH +FR K  GG
Subjt:  PHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVML----------VEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  PGGGVT
        PGG VT
Subjt:  PGGGVT

A0A5D3BTP3 Reverse transcriptase4.8e-1348.36Show/hide
Query:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL
        SAG+APL +R   RW     PT     M    LVEIEL VPD LPTS ESSRS+SS+  +   E   V +                        DDV WL
Subjt:  SAGRAPLHRRTSKRWLYWVCPTQRRLVM----LVEIELLVPDTLPTSTESSRSSSSSMKQ---EGQRVSL----------------------EEDDVRWL

Query:  HAIFRTKLAGGPGGGVTTWYQS
        HAIFR K AGGPGGGVTTWYQS
Subjt:  HAIFRTKLAGGPGGGVTTWYQS

A0A5D3CU23 Retrotrans_gag domain-containing protein2.2e-1061.54Show/hide
Query:  LVEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        +VEIEL V DTLPTS ESS S+S S         +  DDV WLH++FR K A GPGGGVTTWYQS
Subjt:  LVEIELLVPDTLPTSTESSRSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTAGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGAGTGATGGGAGTGATGG
GAGTGATGTTCTAATGTTTTGCATCCCCTTTTATAGGCTCCCAGCAGGCGTAGCGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATTGGTCATGTTGGTAGAGATCGAGCTCCTGGTGCCTGATACATTGCCAACGTCTACTGAAAGTTCC
AGATCAAGCTCCAGTTCAATGAAGCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGG
AGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTAGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGAGTGATGGGAGTGATGG
GAGTGATGTTCTAATGTTTTGCATCCCCTTTTATAGGCTCCCAGCAGGCGTAGCGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATTGGTCATGTTGGTAGAGATCGAGCTCCTGGTGCCTGATACATTGCCAACGTCTACTGAAAGTTCC
AGATCAAGCTCCAGTTCAATGAAGCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGG
AGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVLGMENRAQDFRAKQEDLWPHYDKDDGSAGSDGSDGSDVLMFCIPFYRLPAGVAPHYDKDDGSAGRAPLHRRTSKRWLYWVCPTQRRLVMLVEIELLVPDTLPTSTESS
RSSSSSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTWYQSS