; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035284 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035284
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:21311157..21313140
RNA-Seq ExpressionSpg035284
SyntenySpg035284
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ37083.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]1.2e-1626.23Show/hide
Query:  LCERCWD------RDRDGNIDTQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGL
        L +  WD       D    +    +K+ +++LW  W  RN++     A  A  +          +I E   N      +  ++    E + +W   + G 
Subjt:  LCERCWD------RDRDGNIDTQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGL

Query:  WKINCNASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA
         K+NC+AS      + GIGWI R      +      ++ R K    E L + +GL+         +RVE D ++ VRL+NG EE   + G+ ++ I+ + 
Subjt:  WKINCNASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA

Query:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWLL
            I  + HV R+ N  AH +A    R N   SW G+ P WL+
Subjt:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWLL

XP_021800524.1 uncharacterized protein LOC110744812 [Prunus avium]5.2e-1525.93Show/hide
Query:  CWD--RDRDGNID--TQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCN
        CW+    +   +D   + L+I    LW+IW  RN++   RQ L+   L + +     E  G     +++ S  +    +    +  W   L G  K NC+
Subjt:  CWD--RDRDGNID--TQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCN

Query:  ASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA
         +W  +  RGG+GW++R      L  G R      +I W     +AE       +  C       V VE DS +++R+I G     TE+   + +IQ + 
Subjt:  ASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA

Query:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWL
         +       H+PR+ N  AH +A    R      W    P WL
Subjt:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-1733.17Show/hide
Query:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        S+II W+IW  RN             +Q  ID+ I    G   TNL   S N     I  I  NT  Q  W       WK+N NA+W    + GGIGWIL
Subjt:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHYL
        R      +    R +     I +LE +AI EGL+ +      P+ +E DS++ + L++ Q +D TE+   ++EI  +     I S+ H+ R  N VAH L
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHYL

Query:  AYLACRDN
        A  A  ++
Subjt:  AYLACRDN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-2433.62Show/hide
Query:  QSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        + L + LI  W IW  RN +    +  +  ++ QQ+ K + E   + ET+L     ++++ T+N  ++ KW      +W +N +ASWS+  HRGGIGWI+
Subjt:  QSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC-PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHY
        R W+   +  G R V     +  LEA AI EGL+ L  +    P+ +E DS +V  L+N + ED T+ G  ++EI N+     I +   V R  N  AH 
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC-PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHY

Query:  LAYLACRDNEPNSWSGMFPDWLLTLNEEK
        LA  A    E   W   FP+WL  L + +
Subjt:  LAYLACRDNEPNSWSGMFPDWLLTLNEEK

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.2e-1531.34Show/hide
Query:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        S+II W+IW  RN             +Q  ID+ I    G  +TNL   S N     I  I  NT    +W       WK+N +A+W    + GGIGWIL
Subjt:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC---------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPR
        R      +    R +     I +LE +AI EGL+ +     C         P+ +E DS++ + L++ Q +D TE+   ++EI  +     I S+ H+ R
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC---------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPR

Query:  IHNYVAHYLAYLACRDN
          N VAH LA  A  ++
Subjt:  IHNYVAHYLAYLACRDN

TrEMBL top hitse value%identityAlignment
A0A2P6QSB8 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein5.9e-1726.23Show/hide
Query:  LCERCWD------RDRDGNIDTQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGL
        L +  WD       D    +    +K+ +++LW  W  RN++     A  A  +          +I E   N      +  ++    E + +W   + G 
Subjt:  LCERCWD------RDRDGNIDTQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGL

Query:  WKINCNASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA
         K+NC+AS      + GIGWI R      +      ++ R K    E L + +GL+         +RVE D ++ VRL+NG EE   + G+ ++ I+ + 
Subjt:  WKINCNASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA

Query:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWLL
            I  + HV R+ N  AH +A    R N   SW G+ P WL+
Subjt:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWLL

A0A6J1CP26 uncharacterized protein LOC1110134129.2e-1833.17Show/hide
Query:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        S+II W+IW  RN             +Q  ID+ I    G   TNL   S N     I  I  NT  Q  W       WK+N NA+W    + GGIGWIL
Subjt:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHYL
        R      +    R +     I +LE +AI EGL+ +      P+ +E DS++ + L++ Q +D TE+   ++EI  +     I S+ H+ R  N VAH L
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHYL

Query:  AYLACRDN
        A  A  ++
Subjt:  AYLACRDN

A0A6J1DNV9 uncharacterized protein LOC1110224035.9e-2533.62Show/hide
Query:  QSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        + L + LI  W IW  RN +    +  +  ++ QQ+ K + E   + ET+L     ++++ T+N  ++ KW      +W +N +ASWS+  HRGGIGWI+
Subjt:  QSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC-PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHY
        R W+   +  G R V     +  LEA AI EGL+ L  +    P+ +E DS +V  L+N + ED T+ G  ++EI N+     I +   V R  N  AH 
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC-PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHY

Query:  LAYLACRDNEPNSWSGMFPDWLLTLNEEK
        LA  A    E   W   FP+WL  L + +
Subjt:  LAYLACRDNEPNSWSGMFPDWLLTLNEEK

A0A6J1DSV1 uncharacterized protein LOC1110236082.5e-1531.34Show/hide
Query:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL
        S+II W+IW  RN             +Q  ID+ I    G  +TNL   S N     I  I  NT    +W       WK+N +A+W    + GGIGWIL
Subjt:  SLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPN-----IINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWIL

Query:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC---------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPR
        R      +    R +     I +LE +AI EGL+ +     C         P+ +E DS++ + L++ Q +D TE+   ++EI  +     I S+ H+ R
Subjt:  RGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC---------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIASQRSIDSVVHVPR

Query:  IHNYVAHYLAYLACRDN
          N VAH LA  A  ++
Subjt:  IHNYVAHYLAYLACRDN

A0A6P5RC34 uncharacterized protein LOC1107448122.5e-1525.93Show/hide
Query:  CWD--RDRDGNID--TQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCN
        CW+    +   +D   + L+I    LW+IW  RN++   RQ L+   L + +     E  G     +++ S  +    +    +  W   L G  K NC+
Subjt:  CWD--RDRDGNID--TQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEETNLIVASPNIINITINTEHQPKWTATLEGLWKINCN

Query:  ASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA
         +W  +  RGG+GW++R      L  G R      +I W     +AE       +  C       V VE DS +++R+I G     TE+   + +IQ + 
Subjt:  ASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPC------PVRVECDSIQVVRLINGQEEDFTELGVFIKEIQNIA

Query:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWL
         +       H+PR+ N  AH +A    R      W    P WL
Subjt:  SQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTGGTGGTTATCATGGAAGTTACACAACGGTTCCCACAAACCAGTTCAAGATCTCAGAGAATAGTGGTGAAGTCCATTTTGGTGGTGTCCTGTATCTTTCGGT
CCAAAGGAGCAACTGGGTGGTTGCGGACCTGTGTGAGAGGTGCTGGGATCGGGACAGGGATGGCAACATAGATACTCAAAGCTTAAAGATTAGTCTCATTATTCTCTGGA
AGATTTGGGCATTTAGAAACTCCATTAGTCACAATAGACAAGCTCTCAATGCAGACAGTTTACAGCAGCAGATTGATAAGGCCATAAAGGAGCTAATCGGAGAAGAAGAA
ACGAACCTGATTGTGGCGAGTCCCAACATCATCAACATCACCATCAACACGGAGCACCAGCCGAAATGGACTGCGACCCTCGAAGGCCTTTGGAAAATCAATTGCAATGC
TTCATGGAGTGAGAAGCATCATCGTGGTGGGATAGGTTGGATTTTGCGCGGCTGGAACAGCTTCCCCTTGTCGGTCGGCTACCGTACCGTCATCCACCGCTGGAAAATCC
CATGGCTGGAGGCGCTTGCGATTGCTGAGGGTCTTAAAACGTTGCCGGCGATTCCACCTTGTCCGGTGCGCGTGGAGTGTGATTCCATCCAAGTGGTTAGATTGATTAAT
GGTCAAGAGGAAGACTTCACGGAACTTGGTGTTTTCATTAAAGAGATCCAAAATATCGCCTCCCAAAGGTCTATTGATTCCGTTGTTCACGTTCCTAGGATTCACAATTA
TGTGGCCCATTATTTGGCCTATTTGGCTTGTAGAGACAATGAGCCCAATAGTTGGTCTGGTATGTTTCCTGATTGGCTTTTGACTTTAAATGAGGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTGGTGGTTATCATGGAAGTTACACAACGGTTCCCACAAACCAGTTCAAGATCTCAGAGAATAGTGGTGAAGTCCATTTTGGTGGTGTCCTGTATCTTTCGGT
CCAAAGGAGCAACTGGGTGGTTGCGGACCTGTGTGAGAGGTGCTGGGATCGGGACAGGGATGGCAACATAGATACTCAAAGCTTAAAGATTAGTCTCATTATTCTCTGGA
AGATTTGGGCATTTAGAAACTCCATTAGTCACAATAGACAAGCTCTCAATGCAGACAGTTTACAGCAGCAGATTGATAAGGCCATAAAGGAGCTAATCGGAGAAGAAGAA
ACGAACCTGATTGTGGCGAGTCCCAACATCATCAACATCACCATCAACACGGAGCACCAGCCGAAATGGACTGCGACCCTCGAAGGCCTTTGGAAAATCAATTGCAATGC
TTCATGGAGTGAGAAGCATCATCGTGGTGGGATAGGTTGGATTTTGCGCGGCTGGAACAGCTTCCCCTTGTCGGTCGGCTACCGTACCGTCATCCACCGCTGGAAAATCC
CATGGCTGGAGGCGCTTGCGATTGCTGAGGGTCTTAAAACGTTGCCGGCGATTCCACCTTGTCCGGTGCGCGTGGAGTGTGATTCCATCCAAGTGGTTAGATTGATTAAT
GGTCAAGAGGAAGACTTCACGGAACTTGGTGTTTTCATTAAAGAGATCCAAAATATCGCCTCCCAAAGGTCTATTGATTCCGTTGTTCACGTTCCTAGGATTCACAATTA
TGTGGCCCATTATTTGGCCTATTTGGCTTGTAGAGACAATGAGCCCAATAGTTGGTCTGGTATGTTTCCTGATTGGCTTTTGACTTTAAATGAGGAAAAATAA
Protein sequenceShow/hide protein sequence
MIGGGYHGSYTTVPTNQFKISENSGEVHFGGVLYLSVQRSNWVVADLCERCWDRDRDGNIDTQSLKISLIILWKIWAFRNSISHNRQALNADSLQQQIDKAIKELIGEEE
TNLIVASPNIINITINTEHQPKWTATLEGLWKINCNASWSEKHHRGGIGWILRGWNSFPLSVGYRTVIHRWKIPWLEALAIAEGLKTLPAIPPCPVRVECDSIQVVRLIN
GQEEDFTELGVFIKEIQNIASQRSIDSVVHVPRIHNYVAHYLAYLACRDNEPNSWSGMFPDWLLTLNEEK