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Spg035329 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035329
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:24991892..25001911
RNA-Seq ExpressionSpg035329
SyntenySpg035329
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037768.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-0872.34Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSR
        ++SA E SRG  TASGFRGREQ RFTPG+N+S RQDFK RS GQ+SR
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSR

KAA0040721.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-0945.28Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR
        Q+SA E SRG  TASGFRGREQ RFTPG+N+S RQDFK  S GQ SR   + +   +Q     S   R+     V+S+   GQE I    R   W+S  R
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR

Query:  LYGTMC
         +   C
Subjt:  LYGTMC

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.9e-0842.45Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR
        ++S  E SRG  TASGFRGREQ RFTPG+N+S RQDFK RS G+ SR   + +   +Q  +  S   R+     V S+   GQE I  + R     S  R
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR

Query:  LYGTMC
         +   C
Subjt:  LYGTMC

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0948.94Show/hide
Query:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG
        PRLYGT+CTQ                 VEIELPVPDTLP SAESS+S+SS+    + E   V +        EDDV WLHA+FR K  G P GG
Subjt:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0948.94Show/hide
Query:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG
        PRLYGT+CTQ                 VEIELPVPDTLP SAESS+S+SS+    + E   V +        EDDV WLHA+FR K  G P GG
Subjt:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG

TrEMBL top hitse value%identityAlignment
A0A5A7T4N0 Reverse transcriptase2.9e-0872.34Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSR
        ++SA E SRG  TASGFRGREQ RFTPG+N+S RQDFK RS GQ+SR
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSR

A0A5A7TGD3 DNA/RNA polymerases superfamily protein1.2e-0945.28Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR
        Q+SA E SRG  TASGFRGREQ RFTPG+N+S RQDFK  S GQ SR   + +   +Q     S   R+     V+S+   GQE I    R   W+S  R
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR

Query:  LYGTMC
         +   C
Subjt:  LYGTMC

A0A5A7UFH6 DNA/RNA polymerases superfamily protein3.8e-0842.45Show/hide
Query:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR
        ++S  E SRG  TASGFRGREQ RFTPG+N+S RQDFK RS G+ SR   + +   +Q  +  S   R+     V S+   GQE I  + R     S  R
Subjt:  QRSAAEPSRGAPTASGFRGREQLRFTPGVNVSGRQDFKRRSSGQLSRAPDFRA---KQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPR

Query:  LYGTMC
         +   C
Subjt:  LYGTMC

A0A5A7VMG9 Reverse transcriptase1.2e-0948.94Show/hide
Query:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG
        PRLYGT+CTQ                 VEIELPVPDTLP SAESS+S+SS+    + E   V +        EDDV WLHA+FR K  G P GG
Subjt:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG

A0A5D3DX39 Reverse transcriptase1.2e-0948.94Show/hide
Query:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG
        PRLYGT+CTQ                 VEIELPVPDTLP SAESS+S+SS+    + E   V +        EDDV WLHA+FR K  G P GG
Subjt:  PRLYGTMCTQ-----------------VEIELPVPDTLPMSAESSKSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLVGRPRGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCATTCTGGGGTGTAGAAGTTGAATCAGAAGCCCTATGTGGGCA
ATTTTGGACAAATTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAAATTGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTG
AAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCTG
AGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGCGTCGATCTAGTGGCCAGTTATCGAGAGCACCGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTT
TTCTCTGGTGTTTCGAGCATTCTGGGGTGTAGAAGTTGAATCAGAAGCCCTATGTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTGGCTAAGTCTCCCGA
GGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAGGAG
GGTCAACGGGTATCGTTAGAGGAGGATGATGTTCGTTGGCTTCACGCTATCTTCCGGACTAAGCTAGTAGGTCGTCCGAGAGGGGGTAAGGGCCTAGACTTGCCGGAACC
GCTAAACGATGCCGAAAACACTCAAGAATGCTTCTGGACAGAGGTGAAAACGCAAAAGATAGAACTTCGAGTTGCTGGTGATGCAAGATCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTGTTTCGAGCATTCTGGGGTGTAGAAGTTGAATCAGAAGCCCTATGTGGGCA
ATTTTGGACAAATTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAAATTGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTG
AAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGTCGGCTGCGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCTG
AGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGCGTCGATCTAGTGGCCAGTTATCGAGAGCACCGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTT
TTCTCTGGTGTTTCGAGCATTCTGGGGTGTAGAAGTTGAATCAGAAGCCCTATGTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTGGCTAAGTCTCCCGA
GGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTTCTACGTTTCAGGAG
GGTCAACGGGTATCGTTAGAGGAGGATGATGTTCGTTGGCTTCACGCTATCTTCCGGACTAAGCTAGTAGGTCGTCCGAGAGGGGGTAAGGGCCTAGACTTGCCGGAACC
GCTAAACGATGCCGAAAACACTCAAGAATGCTTCTGGACAGAGGTGAAAACGCAAAAGATAGAACTTCGAGTTGCTGGTGATGCAAGATCTAATTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWFSLVFRAFWGVEVESEALCGQFWTNWPRGNRSSLQTRELAKTVEIELPVPDTLPMSAESSKSSSSSTFQEGQRSAAEPSRGAPTASGFRGREQL
RFTPGVNVSGRQDFKRRSSGQLSRAPDFRAKQEDLWFSLVFRAFWGVEVESEALCGQEEIGRVYRPGNWLSLPRLYGTMCTQVEIELPVPDTLPMSAESSKSSSSSTFQE
GQRVSLEEDDVRWLHAIFRTKLVGRPRGGKGLDLPEPLNDAENTQECFWTEVKTQKIELRVAGDARSN