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Spg035336 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035336
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold7:21173881..21180018
RNA-Seq ExpressionSpg035336
SyntenySpg035336
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-1085.71Show/hide
Query:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS
        VRVA   TQYAYHF DKTEWGAENIITQDGIHSFP LG+FIS
Subjt:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-0982.05Show/hide
Query:  FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
        ++RVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Subjt:  FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.4e-0986.84Show/hide
Query:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
        VRVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Subjt:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
KAA0067076.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-1275.47Show/hide
Query:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
        K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Subjt:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-1275.47Show/hide
Query:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
        K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Subjt:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
TrEMBL top hitse value%identityAlignment
A0A5A7TKJ4 Gag/pol protein9.7e-1082.05Show/hide
Query:  FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
        ++RVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Subjt:  FVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
A0A5A7VFG5 Ty1-copia retrotransposon protein2.2e-0986.84Show/hide
Query:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
        VRVA  PTQYAYHF DKTEWGA NIITQDGIHSFP LG
Subjt:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLG
A0A5A7VKV9 Gag/pol protein2.7e-1275.47Show/hide
Query:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
        K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Subjt:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
A0A5D3C1P5 Gag-pol polyprotein5.1e-1185.71Show/hide
Query:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS
        VRVA   TQYAYHF DKTEWGAENIITQDGIHSFP LG+FIS
Subjt:  VRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFIS
A0A5D3DRR2 Gag/pol protein2.7e-1275.47Show/hide
Query:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
        K VRVA  PT+YAYHF DKTEWG  NIITQDGIHSFP L LFI GAL  KD K
Subjt:  KFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAACAATATAAAGGAGCTGGATTTGGAGAACTTAAGTCCTCATGTCTTTACGCAGTTGCTGAACTTAAGTCCTCATCTGTTCGGGCACCTACTAATGTTGCGAT
GTCAATTTGGTGTTCTCGGGATCAAGAAGGACATTTTGGTGAAGCATGTGGCTCTAGTTTAGGCATTTTATCCCTAATCTTGCTGCACTTTGCATCTTCCTCCGACAGCC
TCAACTCACGTATCGAGACCCAAAAATCAAGACCCACAAGCATCCTCCGACAGCACGCACATCTCCGACGGGCATCTTCTTCACCTTTGAGCAAGGTCTCCGACGAGCAT
CGAGACCCAGATCTGGGCGAGCATCTGAGCAAGGTCTCCGACGAGCAAGGTCTTGGATTGCAAGAAACTCGAAGGAGAAAGAAACCCGCGTCGTGGACTGCCGCTGCTCG
TGAACGTTGCGTCGTCGGAGTTCCACTTTCGACAAATCCGACTGGAATGTTGCGTCGTCGACGGCCCGGGATTGCCCCTCTCCTCCCTCTCCAACGTGTTTCTCGACAAA
TCAAGCTGGAAGTTTCAGATCTGGGATATTTTTGGCCAGATCTGCGTCGTCGAGCCATGGGTCTTTCCGGAACTACCAGATCTGAAGAGAGATGCGCGTGGGTCTTCCAA
TTCCGGCAACCGTGGGTCTTTGAGCACAAACACAAATTCGTGAGAGTGGCCTGCACGCCGACTCAATATGCCTACCATTTTAGGGACAAGACCGAGTGGGGAGCTGAGAA
CATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTTGTTCATTAGTGGAGCACTGGAACTTAAGGATGAAAAGGTAGCCAAAGGAAATATATCTGTAGTGA
GAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAGTCCATCAGGTCTCACCGATGGCTCAAATAAGCTTTGTGGTGGTGTTCGTGGAGGAAAATCCAGCAAAGGA
GAACAAACGAAGCTTGCTAAAATTTTCTGTTTTTGGCTAAGGAGTTGGCGAAACGTTCGAGAATTTCTAGCAAAATCACTGAAAATCGCGCCCAAAATCGAGGCCAAATT
GAAGAACAGTGTTGGAATTGCCCAGAATTTGCCCCCAGACGTACAAGCGTCTCGACGCAATCGCGATAATTTGCAGCGTGCGGTTAGGGTTACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAACAATATAAAGGAGCTGGATTTGGAGAACTTAAGTCCTCATGTCTTTACGCAGTTGCTGAACTTAAGTCCTCATCTGTTCGGGCACCTACTAATGTTGCGAT
GTCAATTTGGTGTTCTCGGGATCAAGAAGGACATTTTGGTGAAGCATGTGGCTCTAGTTTAGGCATTTTATCCCTAATCTTGCTGCACTTTGCATCTTCCTCCGACAGCC
TCAACTCACGTATCGAGACCCAAAAATCAAGACCCACAAGCATCCTCCGACAGCACGCACATCTCCGACGGGCATCTTCTTCACCTTTGAGCAAGGTCTCCGACGAGCAT
CGAGACCCAGATCTGGGCGAGCATCTGAGCAAGGTCTCCGACGAGCAAGGTCTTGGATTGCAAGAAACTCGAAGGAGAAAGAAACCCGCGTCGTGGACTGCCGCTGCTCG
TGAACGTTGCGTCGTCGGAGTTCCACTTTCGACAAATCCGACTGGAATGTTGCGTCGTCGACGGCCCGGGATTGCCCCTCTCCTCCCTCTCCAACGTGTTTCTCGACAAA
TCAAGCTGGAAGTTTCAGATCTGGGATATTTTTGGCCAGATCTGCGTCGTCGAGCCATGGGTCTTTCCGGAACTACCAGATCTGAAGAGAGATGCGCGTGGGTCTTCCAA
TTCCGGCAACCGTGGGTCTTTGAGCACAAACACAAATTCGTGAGAGTGGCCTGCACGCCGACTCAATATGCCTACCATTTTAGGGACAAGACCGAGTGGGGAGCTGAGAA
CATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTTGTTCATTAGTGGAGCACTGGAACTTAAGGATGAAAAGGTAGCCAAAGGAAATATATCTGTAGTGA
GAAGAGTGCAACTGTGGTTCTATAGTGGAGTGAACCATAGTCCATCAGGTCTCACCGATGGCTCAAATAAGCTTTGTGGTGGTGTTCGTGGAGGAAAATCCAGCAAAGGA
GAACAAACGAAGCTTGCTAAAATTTTCTGTTTTTGGCTAAGGAGTTGGCGAAACGTTCGAGAATTTCTAGCAAAATCACTGAAAATCGCGCCCAAAATCGAGGCCAAATT
GAAGAACAGTGTTGGAATTGCCCAGAATTTGCCCCCAGACGTACAAGCGTCTCGACGCAATCGCGATAATTTGCAGCGTGCGGTTAGGGTTACGTGA
Protein sequenceShow/hide protein sequence
MMEQYKGAGFGELKSSCLYAVAELKSSSVRAPTNVAMSIWCSRDQEGHFGEACGSSLGILSLILLHFASSSDSLNSRIETQKSRPTSILRQHAHLRRASSSPLSKVSDEH
RDPDLGEHLSKVSDEQGLGLQETRRRKKPASWTAAARERCVVGVPLSTNPTGMLRRRRPGIAPLLPLQRVSRQIKLEVSDLGYFWPDLRRRAMGLSGTTRSEERCAWVFQ
FRQPWVFEHKHKFVRVACTPTQYAYHFRDKTEWGAENIITQDGIHSFPTLGLFISGALELKDEKVAKGNISVVRRVQLWFYSGVNHSPSGLTDGSNKLCGGVRGGKSSKG
EQTKLAKIFCFWLRSWRNVREFLAKSLKIAPKIEAKLKNSVGIAQNLPPDVQASRRNRDNLQRAVRVT