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Spg035344 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035344
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold7:21796637..21798337
RNA-Seq ExpressionSpg035344
SyntenySpg035344
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-2044.76Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+QK K+KKK+R+LK V EE ++F  P +L+TLA++FP RFL D Q E    V 
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        CH ++V+E++ +P  S         LS F++ +LLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.0e-2145.32Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K+KKK+R+LK + EE ++F    +L+TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAK
        ++ +E++++P  S        DLS F++ +LLSLPQE K
Subjt:  VDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAK

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.7e-1072.34Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVD
        KKLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVD

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.6e-2146.04Show/hide
Query:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K+KKK+++LK + EE ++F    +L+TLA +FP RFL D Q E  E V CH +
Subjt:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIV

Query:  DVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        D +E++ +P  S        DL  F++ +LLSLPQE K+
Subjt:  DVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-2142.14Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+QK K+KKK+R+ K V EE ++F  P +L+T+A+ FP RFL D Q E  E +T
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS---KKLLKEGYSLPTT
        CH ++  E++ +P+ S        +LS F++ +LLSLPQE K+     LL  G S  +T
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS---KKLLKEGYSLPTT

KAA0057705.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-2044.06Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+QK K+KKK+R+LK V EE ++F    +L+ LA++FP RFL D Q E    V 
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        CH ++  ++  +P  S        DLS F++ +LLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein1.4e-2044.76Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+QK K+KKK+R+LK V EE ++F  P +L+TLA++FP RFL D Q E    V 
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        CH ++V+E++ +P  S         LS F++ +LLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

A0A5A7TY01 Ty3-gypsy retrotransposon protein3.7e-2142.14Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+QK K+KKK+R+ K V EE ++F  P +L+T+A+ FP RFL D Q E  E +T
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS---KKLLKEGYSLPTT
        CH ++  E++ +P+ S        +LS F++ +LLSLPQE K+     LL  G S  +T
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS---KKLLKEGYSLPTT

A0A5A7UVV7 Retrotransposon gag protein3.1e-2044.06Show/hide
Query:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT
        ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+QK K+KKK+R+LK V EE ++F    +L+ LA++FP RFL D Q E    V 
Subjt:  MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVT

Query:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        CH ++  ++  +P  S        DLS F++ +LLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

A0A5D3BSG5 Uncharacterized protein9.8e-2245.32Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K+KKK+R+LK + EE ++F    +L+TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAK
        ++ +E++++P  S        DLS F++ +LLSLPQE K
Subjt:  VDVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAK

A0A5D3BSG5 Uncharacterized protein1.3e-1072.34Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVD
        KKLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVD

A0A5D3BSG5 Uncharacterized protein1.3e-2146.04Show/hide
Query:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K+KKK+++LK + EE ++F    +L+TLA +FP RFL D Q E  E V CH +
Subjt:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIV

Query:  DVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS
        D +E++ +P  S        DL  F++ +LLSLPQE K+
Subjt:  DVVEDDDVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGAAAAAAAGAAGTCAAGGAGGTTAAAGCCTGTCATGGAGGAAAGTGAAAATTTCTTTTGTCCTC
CACAACTCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCTAGGAGACTTATCCTCCTTCAGCATAAAGAACTTACTGTCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATA
TAACAGTAGAAGAGGTTGATGACTCAAAAGTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGAAAAAAAGAAGTCAAGGAGGTTAAAGCCTGTCATGGAGGAAAGTGAAAATTTCTTTTGTCCTC
CACAACTCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCTAGGAGACTTATCCTCCTTCAGCATAAAGAACTTACTGTCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGGAAGGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATA
TAACAGTAGAAGAGGTTGATGACTCAAAAGTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAG
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKEKKKSRRLKPVMEESENFFCPPQLITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
DVPASSSGTVAGLGDLSSFSIKNLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKVLFLGASGHQLLVL