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Spg035348 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035348
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:22490363..22494182
RNA-Seq ExpressionSpg035348
SyntenySpg035348
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQM14562.1 hypothetical protein [Colocasia esculenta]5.4e-1740.71Show/hide
Query:  SSSDRDSRKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRN
        S +++  + DKK+ +D G     D  R +   GR   D     + F  YTP ++  EQIL EIRN   +  P++++S+P  RD+++YC FHRDHGH T  
Subjt:  SSSDRDSRKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRN

Query:  CIQLKDEIEALIWNGYLKEFTTKAEADQRVKDNILENTLS
        C QLKDEIE LI  GYL+ F  + E   R +D   E T++
Subjt:  CIQLKDEIEALIWNGYLKEFTTKAEADQRVKDNILENTLS

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.4e-1742.98Show/hide
Query:  RKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE
        R+   + TD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHGH+T++C  LK+E
Subjt:  RKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE

Query:  IEALIWNGYLKEFTTKAEADQ
        +E LI  GYLKE+  + +A Q
Subjt:  IEALIWNGYLKEFTTKAEADQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.6e-1946.49Show/hide
Query:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN
        TD       D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHGH+T++C  LK+E+E LI  
Subjt:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN

Query:  GYLKEFTTKAEADQ
        GYLKE+  + +A Q
Subjt:  GYLKEFTTKAEADQ

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]8.8e-2052.08Show/hide
Query:  QGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEA-DQRVKDN
        Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LI  GYLKE+    +A   R  DN
Subjt:  QGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEA-DQRVKDN

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]2.4e-1753.16Show/hide
Query:  KFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTK
        +F RYTP ++P+EQ+LM+IRN +LL  P+ +K  P+ RD+S+YC +HRDH H+  +C  LK+EI++LI  GYLKEF  K
Subjt:  KFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTK

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.2e-1742.98Show/hide
Query:  RKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE
        R+   + TD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHGH+T++C  LK+E
Subjt:  RKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDE

Query:  IEALIWNGYLKEFTTKAEADQ
        +E LI  GYLKE+  + +A Q
Subjt:  IEALIWNGYLKEFTTKAEADQ

A0A6J1DDR5 uncharacterized protein LOC1110201151.9e-1539.61Show/hide
Query:  EELLKSKKSEREHK-RPSSSDRDSRKDKKQWTDEG---GRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNT---NLLNAPRKLKS
        +EL++ K    E K     + +D  K   +  D+G      R DY R    H R RP        +ERYTPT+IP  +IL  I  +    LL  P KL+ 
Subjt:  EELLKSKKSEREHK-RPSSSDRDSRKDKKQWTDEG---GRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNT---NLLNAPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEADQRVK
        +P+ R+K +YCLFHRDHGHST NC +LK +IE LI + Y K+F  K  ++   K
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEADQRVK

A0A6J1DWY0 uncharacterized protein LOC1110252931.2e-1946.49Show/hide
Query:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN
        TD       D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHGH+T++C  LK+E+E LI  
Subjt:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN

Query:  GYLKEFTTKAEADQ
        GYLKE+  + +A Q
Subjt:  GYLKEFTTKAEADQ

A0A6J1DYL6 uncharacterized protein LOC1110257854.4e-1743.86Show/hide
Query:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN
        TD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHRDH H+T++   LK+E+E LI  
Subjt:  TDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWN

Query:  GYLKEFTTKAEADQ
        GYL+E+  + +A Q
Subjt:  GYLKEFTTKAEADQ

A0A6J1DZ52 uncharacterized protein LOC1110256124.3e-2052.08Show/hide
Query:  QGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEA-DQRVKDN
        Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LI  GYLKE+    +A   R  DN
Subjt:  QGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEA-DQRVKDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAGAGGAGTTGCTCAAATCAAAGAAGTCAGAACGAGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGTGGACCGACGAGGG
AGGCCGAGGCCGACCAGACTATAGCCGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCC
CACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGTCTCTTCCAT
CGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTTGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCCGACCA
GAGGGTTAAGGACAACATTCTGGAGAACACACTAAGCCTTAGTTTAGGGAATTCTAGTTTTCTTTATTCTGTTGCACTTATCATAGCCCACGCCACTGCTCACGAGCCTG
GACTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAACACTTCATGTAAGTCAAGCTCACCTGGCGGAGGGCGAGACCGAGCACCTCTTGCCAAGGCCGAGC
ACAAATTTTAAAGGACAACCGGGCAGAAATAGGGCTAAGAGATGGACCCTAGAGGCGAAACCGACAAATGGGACGGGTCAAGACCGAAGGGGTCGGGCATTTGGCCCGAC
CCCCCTGCTCGGCCTCGGCCCGCTTGCGCGGGTCGAGTCCCACCGACTCTGTTCGGTCCGTGCAGCCTCCAGCCACCCCAGTTCCGCCTGGTTTGTCCCGAAATGCCTCC
GAATTCCTAAAAACCCTAGGAGCATGAACAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGCGCAGGTTTTCAGTTTTGCAGGCCACGTCTTCCCCCGCTCTCAGA
CAAATTCACTGTCGATTATCACGTGGAGCGAAGAGCTCTAAGGCGTCGTTTTTCGATCCTCTTCTTCTCCGATTGGTGTTCTTCCCGAATGGCGTCAACGTCGAGTTTTT
CGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAGAGGAGTTGCTCAAATCAAAGAAGTCAGAACGAGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGTGGACCGACGAGGG
AGGCCGAGGCCGACCAGACTATAGCCGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCC
CACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGTCTCTTCCAT
CGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTTGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCCGACCA
GAGGGTTAAGGACAACATTCTGGAGAACACACTAAGCCTTAGTTTAGGGAATTCTAGTTTTCTTTATTCTGTTGCACTTATCATAGCCCACGCCACTGCTCACGAGCCTG
GACTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAACACTTCATGTAAGTCAAGCTCACCTGGCGGAGGGCGAGACCGAGCACCTCTTGCCAAGGCCGAGC
ACAAATTTTAAAGGACAACCGGGCAGAAATAGGGCTAAGAGATGGACCCTAGAGGCGAAACCGACAAATGGGACGGGTCAAGACCGAAGGGGTCGGGCATTTGGCCCGAC
CCCCCTGCTCGGCCTCGGCCCGCTTGCGCGGGTCGAGTCCCACCGACTCTGTTCGGTCCGTGCAGCCTCCAGCCACCCCAGTTCCGCCTGGTTTGTCCCGAAATGCCTCC
GAATTCCTAAAAACCCTAGGAGCATGAACAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGCGCAGGTTTTCAGTTTTGCAGGCCACGTCTTCCCCCGCTCTCAGA
CAAATTCACTGTCGATTATCACGTGGAGCGAAGAGCTCTAAGGCGTCGTTTTTCGATCCTCTTCTTCTCCGATTGGTGTTCTTCCCGAATGGCGTCAACGTCGAGTTTTT
CGTCTGA
Protein sequenceShow/hide protein sequence
MSVEELLKSKKSEREHKRPSSSDRDSRKDKKQWTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFH
RDHGHSTRNCIQLKDEIEALIWNGYLKEFTTKAEADQRVKDNILENTLSLSLGNSSFLYSVALIIAHATAHEPGLPSLPHLRAQTLAQTLHVSQAHLAEGETEHLLPRPS
TNFKGQPGRNRAKRWTLEAKPTNGTGQDRRGRAFGPTPLLGLGPLARVESHRLCSVRAASSHPSSAWFVPKCLRIPKNPRSMNSIGGGVASTTPVRRFSVLQATSSPALR
QIHCRLSRGAKSSKASFFDPLLLRLVFFPNGVNVEFFV