CuGenDBv2

Gene ID	Spg035426
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold3:2276706..2280427
RNA-Seq Expression	Spg035426
Synteny	Spg035426
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

4.4e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M + + K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.0e-33

65.6

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

3.4e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.6e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.6e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

2.1e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M + + K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein

1.9e-33

65.6

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein

1.2e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein

1.6e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+HS +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein

1.2e-32

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Query:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND
        E+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK +  TS FDRL++TNDQ +R+M +L+ K F E N+D
Subjt:  EQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSIPSRMKRKFSVLINTEGSL
        +K+H+ +PSRMKRK SV INTEGSL
Subjt:  EKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
ATTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGAAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGTGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAGACCTCTTC
TCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAACAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGA
TCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGTGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTT
TCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTTAACATCTGTCTTTGATCGCCTCGAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAG
TTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTT
CGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGTTCCCTCTCCCCAAGTTC
GAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACG
CTGCTGCATTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGTGTTGCTGCATTGTTCCC
TCTTCTCTCAAGTTCAGAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCGAAGTTCGAAGGTTCACGGGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCT
CATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTTGAAGGTTCACACGTTGCGCTGCTTCTTCGCCATGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCG
AAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCT
GTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCACCAAGTTCGAAGATTCACAC
GCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGCACTGCTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTT
GAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACT
GCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGA

mRNA sequence

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Protein sequence

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MSSTAHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFIVKYNPLFEPDSDIVTVMMTETRTMKERMAEMQEHINTLMKVVEEKDSQIAQLKSQIENQHIAESSQTQDLF
SKTFHKKEEGNFVTSYCIDVEQVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAVTEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFLTSVFDRLEVTNDQPKRKMDNLE
LKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFEGSHALRCSSFFSISKVLTRFVAVHSLKFEVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCT
LLHCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSEFLTRCVAVPSPEVRRFTGFAAVPSLQVRRFSCASLQSLLFKFEGSHVALLLRHVRRFTRCAVPSPNS
KVLTLRCFAVPSPSSKVLTLRYFLHQVRRFSRCAVSLFLLQVRRFSCASLQFLLFKFEGSHVALLLHQVRRFTRCAASFTKFEGSDVALLPSLSLKVPTLRCCAASFSKF
EGSYATLLPSPNSKVLRCTATLPVQSLSKFEGSDATLLPSPRSKVLVLRCFAYLSPNSKVLL

Spg035426 (gene) of Sponge gourd (cylindrica) v1 genome