; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035444 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035444
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold3:2404726..2405886
RNA-Seq ExpressionSpg035444
SyntenySpg035444
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]2.9e-3735.89Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        M  VWK   G+ +  IG+NLF+   +S+  ++++ +++PW F+  L++LK+   +D  ED+  +   FW Q H LPLG  NE++ + +G   G V+ +DT
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNR
              WG+FLR R ++ + +PL RG+ L     GKIL   +YE+LPDFCY CG + H +  C +     + + K  K++G W+RA   PR K    +  
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNR

Query:  GYEGIRGGR
        G    R GR
Subjt:  GYEGIRGGR

XP_023888198.1 uncharacterized protein LOC112000324 [Quercus suber]1.2e-3537.19Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        ++ +W+  +   + ++  N+ LI   +E    KIL + PW FD  LI L  P+  +  +D  F+ A FWVQ H+LPL   N   A+ +GS LG V++VD 
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQFGSWMRA--ATPPRQKYFHT
        +   EC GR +R+RV + I++PLCRG  ++ G TG +    +YER+P FCY+CG+++H++  C       +T  K  +Q+G W+RA  A P + +  HT
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQFGSWMRA--ATPPRQKYFHT

XP_023915780.1 uncharacterized protein At4g02000-like [Quercus suber]1.6e-3537.63Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        +R +W+  R   + ++G N  LI  + E    K++ + PW FD  L+ L  PT  +L +D  F++  FWVQ H+LPL   N+T A+++G  LGIV+ VD 
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQFGSWMRA
        +   EC GR+LRVR+++ I +PLCRG  +N G         +YE+L  FCY+CG+++H++  C       +T    E+Q+G+W+ A
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC----PQLKTQAKPEKQFGSWMRA

XP_023926510.1 uncharacterized protein LOC112037926 [Quercus suber]2.7e-3538Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        ++ +W+  +   + ++  N  LI   +E    KIL + PW FD  LI L  P+  +  +D  F+ A FWVQ H+LPL   N   A+ +GS LG V++VD 
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL-----KTQAKPEKQFGSWMRA--ATPPRQKYFHT
        +   EC GR +R+RV + I++PLCRG  ++ G TG +    +YER+P FCY+CG+++H++  C QL     +T  K  +Q+G W+RA  A P + +  HT
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL-----KTQAKPEKQFGSWMRA--ATPPRQKYFHT

XP_030930480.1 uncharacterized protein LOC115956164 [Quercus lobata]1.6e-3537Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        ++ VWK      + ++G+N  +   Q +   D++L  SPW FD  L++L      +  +D+ F+   FW+Q H LP   Q +TV  S+G+ LG V++VD 
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQ----LKTQAKPEKQFGSWMRAATPPRQKYFHTNNR
        N +  C G FLR+RV++ I +PLCRG  +  G  G      KYERLP FCY CGMIDH++  C Q     +T    EKQFG W+RA     QK       
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQ----LKTQAKPEKQFGSWMRAATPPRQKYFHTNNR

Query:  GYEGIRGGRRRFGYRQRRWQPWQSNAG
         Y   R G        RRW    +  G
Subjt:  GYEGIRGGRRRFGYRQRRWQPWQSNAG

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase1.4e-3735.89Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        M  VWK   G+ +  IG+NLF+   +S+  ++++ +++PW F+  L++LK+   +D  ED+  +   FW Q H LPLG  NE++ + +G   G V+ +DT
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNR
              WG+FLR R ++ + +PL RG+ L     GKIL   +YE+LPDFCY CG + H +  C +     + + K  K++G W+RA   PR K    +  
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNR

Query:  GYEGIRGGR
        G    R GR
Subjt:  GYEGIRGGR

A0A1R3K847 Uncharacterized protein8.4e-3534.13Show/hide
Query:  VWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEA
        VWK   G+ +  IG+ L++   +SE  ++++ ++ PW F+  L++LK    F   E++  E   FW+Q H LPLG   E+V +++G   G V  +DT   
Subjt:  VWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEA

Query:  DECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNRGYE
           WG+FLR+R  + + +PL RG+ L     GKIL   +YE+LPDFCY CG ++H +  C +     +   K +K++G W+RA   PR      +  G  
Subjt:  DECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQL----KTQAKPEKQFGSWMRAATPPRQKYFHTNNRGYE

Query:  GIRGGRRR
          R G+ +
Subjt:  GIRGGRRR

A0A2N9E949 CCHC-type domain-containing protein2.1e-3338.05Show/hide
Query:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT
        M   W+  +G  + +IGDNLF+        RD +L   PW FD NL+LLK        + M   EA FW+Q H LP    NE  A S+G+ LG+++ +D 
Subjt:  MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDT

Query:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-----QFGSWMRAATPPRQKYFHTNN
         E    WG F+RV+V++ +  PL R   +  G    I   +KYE+LP FCY CG++ H++  C +L TQ +  K     ++GSW+R ATP R+K   T +
Subjt:  NEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-----QFGSWMRAATPPRQKYFHTNN

Query:  RGYEG
          +EG
Subjt:  RGYEG

A0A2N9F689 Uncharacterized protein2.7e-3337.37Show/hide
Query:  MRGVWK--FCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRV
        M  +WK    RG+   +IGDNLFL     +  ++ +L  SPWCFD  L++LK         ++  +EA FWVQ + LP+      V +++G  +G V+ V
Subjt:  MRGVWK--FCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRV

Query:  DTNEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCP-QLKTQAK-----PEKQFGSWMRA
        +       WGRFLRVRV++ +++PL R   +  G    IL   +YERLP+FC+YCG +DH +  C  +L+ + K      E Q+G W+RA
Subjt:  DTNEADECWGRFLRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCP-QLKTQAK-----PEKQFGSWMRA

A0A6J1BSZ1 uncharacterized protein LOC1110054816.0e-3340Show/hide
Query:  WKF-CRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEA
        WK  C+  ++D IG N+FL N      R++IL   PW FD  LI++  P +   P DM F     WV F  L L   N+T+A  LG+ +G+ + V++N  
Subjt:  WKF-CRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEA

Query:  DECWGRFLRVRVKMKIKEPLCRGLTLN-GGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-QFGSWMR
        + CWG  LRVRV+  + +PL RG+ LN  GP G     I+YERLPDF Y+CG +DH    C      +  +  Q+G W+R
Subjt:  DECWGRFLRVRVKMKIKEPLCRGLTLN-GGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEK-QFGSWMR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G31430.1 unknown protein2.0e-1230.88Show/hide
Query:  EQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCRGL
        E+  + +L   PW F+  +ILL+       P+  +F    FWVQ   +P    N  V + +G  LG V   D N        F RV +   I  PL    
Subjt:  EQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCRGL

Query:  TLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC
                  L   +YERL  FC  CGM+ H+ G+C
Subjt:  TLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSC

AT3G42140.1 zinc ion binding;nucleic acid binding9.3e-1026.24Show/hide
Query:  QSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCR
        QSE+    IL   PW F+  + +++  T   L  D  F+   FW+Q   +PL      +  S+G R+G+   ++TN                        
Subjt:  QSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRFLRVRVKMKIKEPLCR

Query:  GLTLNGGPTGKILAVIK--YERLPDFCYYCGMIDHNDGSCP
                 G+ ++V+K  YE+L +FC  CGM+ H+   CP
Subjt:  GLTLNGGPTGKILAVIK--YERLPDFCYYCGMIDHNDGSCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAGTGTGGAAATTCTGCCGAGGGATAACCATTGATAACATCGGGGACAATCTTTTCCTAATTAACCCTCAATCAGAACAGGGAAGAGACAAAATATTGGAAGA
AAGCCCGTGGTGTTTCGATGGCAACTTGATACTCCTCAAAGCTCCAACGACATTTGACTTACCAGAAGATATGGTATTTGAAGAAGCCCAATTCTGGGTTCAATTTCACC
ACCTCCCGTTGGGACTACAGAACGAAACAGTGGCTCAATCACTTGGGAGTCGTTTAGGGATAGTTCAGAGAGTTGACACTAATGAAGCGGATGAATGCTGGGGTCGGTTC
CTTCGAGTACGGGTCAAAATGAAGATCAAAGAACCATTATGCAGAGGCCTAACTCTAAACGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACC
AGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCGTGCCCCCAACTCAAGACTCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAA
CTCCCCCGAGACAAAAATATTTTCACACAAATAACAGAGGATACGAGGGAATTAGAGGAGGAAGAAGACGGTTCGGGTACAGACAAAGAAGATGGCAACCATGGCAATCC
AACGCAGGGGAGGAAGAAGAAGAAAACATACATGGAGATTCAGAGGACTCCCAAAGCTCCGACGAAAGCGGTGACGAACGGCAGCCGGAAAACAACCGTCGATCGCCTAC
TACACCCGTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACGGAGATAACGGGTATTAAATGTCCCCTTTCCTTTGATAACGCTTCTCTTGCGGAGAATTTCCCTT
TTAATGCAGGCGGCGTGATTCACGGCAACGCGAATGGAGAAAATAATGGCTCCTCCGGTTTGGAAGGTCTGAAATCTTGCGAATCAAATATGGGCAAAGGGAAGAGAAGA
AACGGCTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAAGAGTTGGTGGGCCCGGGTCCATTAACATGACCCAACCTACTACCCAGATGATGGATGTCAC
GCTGGTAAATAATTTGGGCATCAAACCCAACTCAAGCTTCACAAAAATTCAGGCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAGTGTGGAAATTCTGCCGAGGGATAACCATTGATAACATCGGGGACAATCTTTTCCTAATTAACCCTCAATCAGAACAGGGAAGAGACAAAATATTGGAAGA
AAGCCCGTGGTGTTTCGATGGCAACTTGATACTCCTCAAAGCTCCAACGACATTTGACTTACCAGAAGATATGGTATTTGAAGAAGCCCAATTCTGGGTTCAATTTCACC
ACCTCCCGTTGGGACTACAGAACGAAACAGTGGCTCAATCACTTGGGAGTCGTTTAGGGATAGTTCAGAGAGTTGACACTAATGAAGCGGATGAATGCTGGGGTCGGTTC
CTTCGAGTACGGGTCAAAATGAAGATCAAAGAACCATTATGCAGAGGCCTAACTCTAAACGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACC
AGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCGTGCCCCCAACTCAAGACTCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAA
CTCCCCCGAGACAAAAATATTTTCACACAAATAACAGAGGATACGAGGGAATTAGAGGAGGAAGAAGACGGTTCGGGTACAGACAAAGAAGATGGCAACCATGGCAATCC
AACGCAGGGGAGGAAGAAGAAGAAAACATACATGGAGATTCAGAGGACTCCCAAAGCTCCGACGAAAGCGGTGACGAACGGCAGCCGGAAAACAACCGTCGATCGCCTAC
TACACCCGTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACGGAGATAACGGGTATTAAATGTCCCCTTTCCTTTGATAACGCTTCTCTTGCGGAGAATTTCCCTT
TTAATGCAGGCGGCGTGATTCACGGCAACGCGAATGGAGAAAATAATGGCTCCTCCGGTTTGGAAGGTCTGAAATCTTGCGAATCAAATATGGGCAAAGGGAAGAGAAGA
AACGGCTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAAGAGTTGGTGGGCCCGGGTCCATTAACATGACCCAACCTACTACCCAGATGATGGATGTCAC
GCTGGTAAATAATTTGGGCATCAAACCCAACTCAAGCTTCACAAAAATTCAGGCCAAATGA
Protein sequenceShow/hide protein sequence
MRGVWKFCRGITIDNIGDNLFLINPQSEQGRDKILEESPWCFDGNLILLKAPTTFDLPEDMVFEEAQFWVQFHHLPLGLQNETVAQSLGSRLGIVQRVDTNEADECWGRF
LRVRVKMKIKEPLCRGLTLNGGPTGKILAVIKYERLPDFCYYCGMIDHNDGSCPQLKTQAKPEKQFGSWMRAATPPRQKYFHTNNRGYEGIRGGRRRFGYRQRRWQPWQS
NAGEEEEENIHGDSEDSQSSDESGDERQPENNRRSPTTPVSDEFSPQSMQSTEITGIKCPLSFDNASLAENFPFNAGGVIHGNANGENNGSSGLEGLKSCESNMGKGKRR
NGCCEDLGQGNSVGEKRVGGPGSINMTQPTTQMMDVTLVNNLGIKPNSSFTKIQAK