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Spg035460 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035460
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:601017..604795
RNA-Seq ExpressionSpg035460
SyntenySpg035460
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1862.24Show/hide
Query:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG
        PL TLSVL DNDAV+SAG+APL +   +RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+     VI QT+ CQG
Subjt:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.6e-1140Show/hide
Query:  KKKKKNFVVLRLKKIGKAHAKPAIAESEFNL-STSGFWF---GLSYTEGTKRAQDFR--AQQEDLWFSLVFRAFWGVHVESEALFGYIPLLTLSVLRDND
        K++++ F  LRLKK+ K      +     NL +T   WF   GLSY EGT R +  R   Q   L  +++F+                 L TLSVLRDND
Subjt:  KKKKKNFVVLRLKKIGKAHAKPAIAESEFNL-STSGFWF---GLSYTEGTKRAQDFR--AQQEDLWFSLVFRAFWGVHVESEALFGYIPLLTLSVLRDND

Query:  AVMSAGRAPLHRMTSKRWLYWACPTQRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVIF
        AV+               L+   PT +     VEIELP+PDTLPT AES  S+SSTW+ELY ESVH+ +F
Subjt:  AVMSAGRAPLHRMTSKRWLYWACPTQRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVIF

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]9.4e-1765.52Show/hide
Query:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS
        L TLSVLRDNDAV+SAG            RAPLHR TSKRWLYWACPT RRSV L          VEIEL VPDTLPTSAESS S+S
Subjt:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]9.4e-1765.52Show/hide
Query:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS
        L TLSVLRDNDAV+SAG            RAPLHR TSKRWLYWACPT RRSV L          VEIEL VPDTLPTSAESS S+S
Subjt:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1862.24Show/hide
Query:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG
        PL TLSVL DNDAV+SAG+APL +   +RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+     VI QT+ CQG
Subjt:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.3e-1962.24Show/hide
Query:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG
        PL TLSVL DNDAV+SAG+APL +   +RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+     VI QT+ CQG
Subjt:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG

A0A5A7UGD0 Uncharacterized protein1.3e-1140Show/hide
Query:  KKKKKNFVVLRLKKIGKAHAKPAIAESEFNL-STSGFWF---GLSYTEGTKRAQDFR--AQQEDLWFSLVFRAFWGVHVESEALFGYIPLLTLSVLRDND
        K++++ F  LRLKK+ K      +     NL +T   WF   GLSY EGT R +  R   Q   L  +++F+                 L TLSVLRDND
Subjt:  KKKKKNFVVLRLKKIGKAHAKPAIAESEFNL-STSGFWF---GLSYTEGTKRAQDFR--AQQEDLWFSLVFRAFWGVHVESEALFGYIPLLTLSVLRDND

Query:  AVMSAGRAPLHRMTSKRWLYWACPTQRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVIF
        AV+               L+   PT +     VEIELP+PDTLPT AES  S+SSTW+ELY ESVH+ +F
Subjt:  AVMSAGRAPLHRMTSKRWLYWACPTQRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVIF

A0A5A7VGQ5 Uncharacterized protein4.5e-1765.52Show/hide
Query:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS
        L TLSVLRDNDAV+SAG            RAPLHR TSKRWLYWACPT RRSV L          VEIEL VPDTLPTSAESS S+S
Subjt:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein4.5e-1765.52Show/hide
Query:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS
        L TLSVLRDNDAV+SAG            RAPLHR TSKRWLYWACPT RRSV L          VEIEL VPDTLPTSAESS S+S
Subjt:  LLTLSVLRDNDAVMSAG------------RAPLHRMTSKRWLYWACPTQRRSVSL----------VEIELPVPDTLPTSAESSRSSS

A0A5D3BTP3 Reverse transcriptase8.3e-1962.24Show/hide
Query:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG
        PL TLSVL DNDAV+SAG+APL +   +RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ESVH+     VI QT+ CQG
Subjt:  PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPT----QRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----VIFQTELCQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTACACGGACGCCTTGGATCAATACGTCTGTATCGAATACAAAGCTGGCCGTATCACATAGTGTTACCAGGATAAGGAAGAAGAAGAAGAAGAATTTCGTGGT
TTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGGTTCGGTTTGAGTTACACAGAAGGAA
CTAAGAGAGCACAGGATTTTCGAGCACAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACACGTTGAATCCGAAGCTCTATTTGGTTATATT
CCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACATCGTATGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTAC
ACAACGTAGATCGGTCTCGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATA
TTGAGTCTGTCCATATTGTTATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGCAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTTTGTGTTGCAGCAAAGCTGG
GAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCTACACGGACGCCTTGGATCAATACGTCTGTATCGAATACAAAGCTGGCCGTATCACATAGTGTTACCAGGATAAGGAAGAAGAAGAAGAAGAATTTCGTGGT
TTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGGTTCGGTTTGAGTTACACAGAAGGAA
CTAAGAGAGCACAGGATTTTCGAGCACAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACACGTTGAATCCGAAGCTCTATTTGGTTATATT
CCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACATCGTATGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTAC
ACAACGTAGATCGGTCTCGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATA
TTGAGTCTGTCCATATTGTTATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGCAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTTTGTGTTGCAGCAAAGCTGG
GAGTGA
Protein sequenceShow/hide protein sequence
MSPTRTPWINTSVSNTKLAVSHSVTRIRKKKKKNFVVLRLKKIGKAHAKPAIAESEFNLSTSGFWFGLSYTEGTKRAQDFRAQQEDLWFSLVFRAFWGVHVESEALFGYI
PLLTLSVLRDNDAVMSAGRAPLHRMTSKRWLYWACPTQRRSVSLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVIFQTELCQGDTSQSVAGRLEGANFVLQQSW
E