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Spg035470 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035470
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:2918101..2921076
RNA-Seq ExpressionSpg035470
SyntenySpg035470
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1453.4Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDD+ WLHA+FR K AGG GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE

Query:  PSP
          P
Subjt:  PSP

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1355.1Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE
        F+E+SI YMTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S S         +  DD+ WLHAIFR K AGG GG+
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]3.1e-1152.69Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG
        +SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DD+ WLH +FR K  GG G
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]1.3e-1253.19Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S S         +  DD+ WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1453.4Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDD+ WLHA+FR K AGG GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE

Query:  PSP
          P
Subjt:  PSP

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein1.5e-1152.69Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG
        +SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DD+ WLH +FR K  GG G
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG

A0A5A7VMG9 Reverse transcriptase3.3e-1453.4Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDD+ WLHA+FR K AGG GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE

Query:  PSP
          P
Subjt:  PSP

A0A5D3BP54 Gag/pol protein9.6e-1455.1Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE
        F+E+SI YMTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S S         +  DD+ WLHAIFR K AGG GG+
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE

A0A5D3CIF4 Gag protease polyprotein6.2e-1353.19Show/hide
Query:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG
        F+E+SIDY+TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S S         +  DD+ WLH +FR K   G
Subjt:  FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG

A0A5D3DX39 Reverse transcriptase3.3e-1453.4Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDD+ WLHA+FR K AGG GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGE

Query:  PSP
          P
Subjt:  PSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATTGTTGAATTTAACAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGC
GTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTATTCAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGA
CTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCC
AGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGCCTTC
CCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTTGATGAAGAACACATGGGTTTTGTGCCTTGGGAGCTATGGTGTTTGAGAGAGTTTT
CTTTTCAGTTTTGCATGAGATTTCTCCAGCAACTTCAACTAAATTCCATACCCCTT
mRNA sequenceShow/hide mRNA sequence
ATGACTGCAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATTGTTGAATTTAACAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGC
GTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTATTCAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGA
CTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCC
AGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGCCTTC
CCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTTGATGAAGAACACATGGGTTTTGTGCCTTGGGAGCTATGGTGTTTGAGAGAGTTTT
CTTTTCAGTTTTGCATGAGATTTCTCCAGCAACTTCAACTAAATTCCATACCCCTT
Protein sequenceShow/hide protein sequence
MTANPRLSLDHLLLSSIVVSLLNLTENLESVLSVFGAFLDKLVENLVFIYSDNDKQACSNVFMGFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSS
SSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGEPSPLFSGLRTGLWEPEHDEFDEEHMGFVPWELWCLREFSFQFCMRFLQQLQLNSIPL