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Spg035487 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035487
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
Genome locationscaffold3:1762863..1765693
RNA-Seq ExpressionSpg035487
SyntenySpg035487
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.2e-0764.1Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD
        SRHFN +LN++LRLHE+LLKQP+PV+ +C  EKW+WF++
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD

KAA0045359.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.2e-0761.54Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD
        SRHFN +LN++LR+HE+LLKQP+PV+ +C  EKW+WF++
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD

KAA0063790.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.6e-0651.72Show/hide
Query:  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF
        K  D+K RV            SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Subjt:  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF

KAG6523854.1 hypothetical protein ZIOFF_013741 [Zingiber officinale]1.6e-0639.36Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRV------VTSRHFNTILNSVLRLHELLLKQLEPVSATCL-----DEKWK
        SR F+ +LNS+LRLH +LLK+PEP+   C DE+WKWFK L M+ ++      V S               L  KQ + V   CL     D  WK
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRV------VTSRHFNTILNSVLRLHELLLKQLEPVSATCL-----DEKWK

XP_024950087.1 uncharacterized protein LOC102629376 [Citrus sinensis]9.4e-0755.32Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRVV
        SR+FN+ILN +LRLH++LL+ PEPV   C DE+WKWFK   ++ +V+
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKDLDMKCRVV

TrEMBL top hitse value%identityAlignment
A0A5A7TF70 Putative nuclease HARBI12.0e-0764.1Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD
        SRHFN +LN++LRLHE+LLKQP+PV+ +C  EKW+WF++
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD

A0A5A7TVU4 Putative nuclease HARBI13.5e-0761.54Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD
        SRHFN +LN++LR+HE+LLKQP+PV+ +C  EKW+WF++
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD

A0A5A7V9B2 Putative nuclease HARBI17.8e-0751.72Show/hide
Query:  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF
        K  D+K RV            SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Subjt:  KDLDMKCRV----------VTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF

A0A5D3C603 Putative nuclease HARBI17.8e-0767.57Show/hide
Query:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF
        SRHFN +LN++LRLHE+LLKQP PV+ +C  EKW+WF
Subjt:  SRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWF

A0A5E4GB10 PREDICTED: ALP1 (Fragment)1.0e-0659.52Show/hide
Query:  VVTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD
        V  SR+FN +LN++LRLHE+LLK P+PV   C +E+WKWFK+
Subjt:  VVTSRHFNTILNSMLRLHELLLKQPEPVSATCLDEKWKWFKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCCCTCTCTCTCTTGTCTCTTTCTCCCTCTCGATCTCACCCTCTTTCTCTCTCTACTGTAAGGTTCGGTTTTGTCGCTCACCACTGCCCTCTTCCATCATCACT
GCGCGCCTCCGCCATTGCAGATTCGCCGCACGCAGCCGTCTGCTTCACCACACGCCGCCGTCTGCTTCACCGCGCGTCGTCGTCTCACCTCACCGCACGCTGCCGTCGCA
TATCGCCTCCATTGGCTGGCATTGTAAAGGCAAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTATGTTGCGATTACAT
GAGTTACTACTTAAACAACCTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTT
TAATACAATTCTTAACTCTGTGTTGCGATTACATGAGTTACTACTTAAACAACTTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCCCTCTCTCTCTTGTCTCTTTCTCCCTCTCGATCTCACCCTCTTTCTCTCTCTACTGTAAGGTTCGGTTTTGTCGCTCACCACTGCCCTCTTCCATCATCACT
GCGCGCCTCCGCCATTGCAGATTCGCCGCACGCAGCCGTCTGCTTCACCACACGCCGCCGTCTGCTTCACCGCGCGTCGTCGTCTCACCTCACCGCACGCTGCCGTCGCA
TATCGCCTCCATTGGCTGGCATTGTAAAGGCAAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTTTAATACAATTCTTAACTCTATGTTGCGATTACAT
GAGTTACTACTTAAACAACCTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAGGATCTAGACATGAAATGTAGGGTCGTTACAAGTAGGCACTT
TAATACAATTCTTAACTCTGTGTTGCGATTACATGAGTTACTACTTAAACAACTTGAGCCAGTTTCTGCCACCTGCTTGGACGAAAAATGGAAGTGGTTTAAG
Protein sequenceShow/hide protein sequence
MFSLSLLSLSPSRSHPLSLSTVRFGFVAHHCPLPSSLRASAIADSPHAAVCFTTRRRLLHRASSSHLTARCRRISPPLAGIVKAKDLDMKCRVVTSRHFNTILNSMLRLH
ELLLKQPEPVSATCLDEKWKWFKDLDMKCRVVTSRHFNTILNSVLRLHELLLKQLEPVSATCLDEKWKWFK