; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035488 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035488
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:1202379..1204666
RNA-Seq ExpressionSpg035488
SyntenySpg035488
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.0e-1844.85Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E   KR +   R+   DK Q +    R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.1e-2147.06Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR +   R+   DK Q +    R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.9e-2041.56Show/hide
Query:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQ
        +KYMSAEE       L+ K+ +++ +R       S+ +K+ R          Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +
Subjt:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQ

Query:  YCLFHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQRWPRPTRDDPGK
        YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  YCLFHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQRWPRPTRDDPGK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]3.1e-1844.85Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR +   R+   DK Q +    R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]7.6e-1742.57Show/hide
Query:  KYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTD---DHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLF
        KYM+AE+ L + + E+  KR     R  R  K  RT    D  R RP  G    +F  +TP + P +Q+LM+I+N   L  P KLK NP+ R + +YC F
Subjt:  KYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTD---DHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLF

Query:  HRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEAD-QRWPRPTRDD
        HRDHGH T NC  LK +IE LIR G L+ F +K   D    P P R++
Subjt:  HRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEAD-QRWPRPTRDD

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.9e-1844.85Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E   KR +   R+   DK Q +    R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

A0A6J1DWY0 uncharacterized protein LOC1110252932.5e-2147.06Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR +   R+   DK Q +    R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

A0A6J1DYL6 uncharacterized protein LOC1110257851.5e-1844.85Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR +   R+   DK Q +    R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

A0A6J1DZ52 uncharacterized protein LOC1110256129.3e-2141.56Show/hide
Query:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQ
        +KYMSAEE       L+ K+ +++ +R       S+ +K+ R          Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +
Subjt:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQ

Query:  YCLFHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQRWPRPTRDDPGK
        YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  YCLFHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQRWPRPTRDDPGK

A0A7N2N013 Ribonuclease H1.8e-1641.73Show/hide
Query:  KYMSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRTDDHGRGRPDQ--GDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL
        KYM+AE+ L S++      RP   DR  DSR+D+ ++    G  R D+       +F  +TP + P +Q+LM+I++   L  P KLKS+P  R + +YC 
Subjt:  KYMSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRTDDHGRGRPDQ--GDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL

Query:  FHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ
        FHRDHGH T +C  LK +IE LIR G L++F  K   DQ
Subjt:  FHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATCACCTGTGTTATAGGCAATTTTGGACCACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAGCCGA
CCAAAGGGCCGGGCCAACTTGGCCCGACCATTCGGCCCGCTTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCC
TCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATCT
ACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAATTCTAGACATAAACACAGAGAATTCGGATGGTGACCGCCACCAGCGGAGGTCACGGGAAGA
AGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCTGTCTCCACTGCCCTCATCCCGAGAGAAGCAAACTGATCTCAAATTTGCTGCTTTCGAAAACAAAGTAAGTG
CGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGACGAGAGGCTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCC
ATGGAGCACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGAATGACCAGCAAGGTCAGGGGGCTCAAGCCTACTGATCGTACGATTTTGAGGAGCCC
AGAGTCAAGCACACTTAGGGGACGTGACTACACAATTTCTACCCCAAGCTACGGTCATACTAAGACAGATCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAA
CTGCCGAGTCCGAGGCCAGAGCTGCTGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGACGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAAGAC
AATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTCAAAGGACTCAGGAGCACAAGACTTGGAAAAATACAT
GAGCGCAGAGGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGCGGACCGACGACCATG
GCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTC
AACGCGCCTAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTCTCTTTCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGA
TGAGATTGAAGTGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGG
GTGGACCTCAACTGGAAATTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATCACCTGTGTTATAGGCAATTTTGGACCACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCCAGAGGAAGAGCCGA
CCAAAGGGCCGGGCCAACTTGGCCCGACCATTCGGCCCGCTTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCC
TCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCTCATCT
ACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAATTCTAGACATAAACACAGAGAATTCGGATGGTGACCGCCACCAGCGGAGGTCACGGGAAGA
AGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCTGTCTCCACTGCCCTCATCCCGAGAGAAGCAAACTGATCTCAAATTTGCTGCTTTCGAAAACAAAGTAAGTG
CGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGACGAGAGGCTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCC
ATGGAGCACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGAATGACCAGCAAGGTCAGGGGGCTCAAGCCTACTGATCGTACGATTTTGAGGAGCCC
AGAGTCAAGCACACTTAGGGGACGTGACTACACAATTTCTACCCCAAGCTACGGTCATACTAAGACAGATCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAA
CTGCCGAGTCCGAGGCCAGAGCTGCTGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGACGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAAGAC
AATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTCAAAGGACTCAGGAGCACAAGACTTGGAAAAATACAT
GAGCGCAGAGGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGCGGACCGACGACCATG
GCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTC
AACGCGCCTAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTCTCTTTCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGA
TGAGATTGAAGTGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGG
GTGGACCTCAACTGGAAATTCATTGA
Protein sequenceShow/hide protein sequence
MVITCVIGNFGPPDAQGADEDVRAKIGLGDRPRGRADQRAGPTWPDHSARFGHLLSVPDASSRPGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFSLLQATSSPSS
TNLPLVAREGQGMEMRILDINTENSDGDRHQRRSREEGRDRPRTESPRPLSPLPSSREKQTDLKFAAFENKVSAMDHNLSRILRILDKPGPSTKTPDERLVRDPRKGKEP
MEHTAESETRSKGKKTSRMTSKVRGLKPTDRTILRSPESSTLRGRDYTISTPSYGHTKTDLRNLIEEKRRSAKTAESEARAAEAEARAAEAEARAAEDEARLAEAEAKKD
NPPWKTELLNTLKELGNPQGYLQKSKDSGAQDLEKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLL
NAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEVLIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIH