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Spg035499 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035499
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold3:684805..686602
RNA-Seq ExpressionSpg035499
SyntenySpg035499
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-2144.06Show/hide
Query:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        +  S EK   IE+++EGW +V RRKK+K +   KESC +R+ +R  K+Q+ K KKK+R+ K   EE +DF  P + +TLA++FP RFL D Q E   +V 
Subjt:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS
        CH ++V+E++ +P  S         LS F++ DLLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS

KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]2.8e-1961.29Show/hide
Query:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN
        KKLL+EG+++P +RK LGYKSPEPIRITR+GK KV D NH+TV+EVD  +EKE   QRTS F  I P VA A V +RLSV E E +  Q T N
Subjt:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]7.5e-2043.17Show/hide
Query:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
        S+EK   IE+++EGWT+V RRKK+K +  +KE   +R+ ++  K+Q+ K KKK+R+ K   EE +DF    + +TLA++FP RFL D Q E   +V CH 
Subjt:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK
        ++ +E++++P  S        DLS F++ DLLSLPQE K
Subjt:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.0e-1758.06Show/hide
Query:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN
        KKLL+EG+ +P +RK LGYKSPEPIRITR+GK KV D+NH+TV+EVD  +E E   QRTS F  I P VA   V +RLS+ E E +  Q T N
Subjt:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.3e-1943.88Show/hide
Query:  EEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIV
        +EK  SIE ++EGWT+V RRKK+K +  +KE   +R+ +R  K+Q+ K KKK+++ K   EE +DF    + +TLA +FP RFL D Q E  E+V CH +
Subjt:  EEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIV

Query:  DVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS
        D +E++ +P  S        DL  F++ DLLSLPQE K+
Subjt:  DVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-2141.51Show/hide
Query:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        +  S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+Q+ K KKK+R+ K   EE +DF  P + +T+A+ FP RFL D Q E  E++T
Subjt:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS---KKLLKEGYSLPTT
        CH ++  E++ +P+ S        +LS F++ DLLSLPQE K+     LL  G S  +T
Subjt:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS---KKLLKEGYSLPTT

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein3.3e-2144.06Show/hide
Query:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        +  S EK   IE+++EGW +V RRKK+K +   KESC +R+ +R  K+Q+ K KKK+R+ K   EE +DF  P + +TLA++FP RFL D Q E   +V 
Subjt:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS
        CH ++V+E++ +P  S         LS F++ DLLSLPQE K+
Subjt:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS

A0A5A7TY01 Ty3-gypsy retrotransposon protein1.5e-2141.51Show/hide
Query:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT
        +  S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+Q+ K KKK+R+ K   EE +DF  P + +T+A+ FP RFL D Q E  E++T
Subjt:  MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVT

Query:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS---KKLLKEGYSLPTT
        CH ++  E++ +P+ S        +LS F++ DLLSLPQE K+     LL  G S  +T
Subjt:  CHIVDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS---KKLLKEGYSLPTT

A0A5D3BSG5 Uncharacterized protein3.6e-2043.17Show/hide
Query:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
        S+EK   IE+++EGWT+V RRKK+K +  +KE   +R+ ++  K+Q+ K KKK+R+ K   EE +DF    + +TLA++FP RFL D Q E   +V CH 
Subjt:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK
        ++ +E++++P  S        DLS F++ DLLSLPQE K
Subjt:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK

A0A5D3BSG5 Uncharacterized protein9.8e-1858.06Show/hide
Query:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN
        KKLL+EG+ +P +RK LGYKSPEPIRITR+GK KV D+NH+TV+EVD  +E E   QRTS F  I P VA   V +RLS+ E E +  Q T N
Subjt:  KKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN

A0A5D3BSG5 Uncharacterized protein6.2e-2043.88Show/hide
Query:  EEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIV
        +EK  SIE ++EGWT+V RRKK+K +  +KE   +R+ +R  K+Q+ K KKK+++ K   EE +DF    + +TLA +FP RFL D Q E  E+V CH +
Subjt:  EEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIV

Query:  DVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS
        D +E++ +P  S        DL  F++ DLLSLPQE K+
Subjt:  DVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAKS

A0A5D3BY10 Uncharacterized protein1.4e-1944.6Show/hide
Query:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI
        S+EK  SIE+ +EGW +V RRKK+K +  +KES  +R+ +R  K+Q  K KKK+R+ K A +E +DF  P + +TLA++F  RFL D Q E  ++V CH 
Subjt:  SEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHI

Query:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK
        ++  E++ +P  S        DLS F++ DLLSLPQE K
Subjt:  VDVVEDDDVPASSSGTMASPGDLSAFSIKDLLSLPQEAK

A0A5D3BY10 Uncharacterized protein2.5e-0543.75Show/hide
Query:  RKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN
        +KR   +  +   I R+GK  V D  H+T+EEVD  +EKE   QR SVF  IRP VA   + +RLS+ ETE +  Q T +
Subjt:  RKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQRLSVNETEEESTQLTDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGATCCGAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACACTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCTG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGCCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAATTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGATGGCAAGTCCAGGAGACTTATCTGCCTTTAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGGAAGGTTATAGTCTGCCAACAACGAGAAAAAGGCTTGGATATAAGTCGCCAGAGCCGATTCGCATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATT
TAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCTTGCTTTAGTCTCTCAGAGA
TTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACTTACCGATAACTCCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGATCCGAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACACTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCTG
CCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGCCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAATTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGATGGCAAGTCCAGGAGACTTATCTGCCTTTAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCT
AAAGGAAGGTTATAGTCTGCCAACAACGAGAAAAAGGCTTGGATATAAGTCGCCAGAGCCGATTCGCATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATT
TAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCTTGCTTTAGTCTCTCAGAGA
TTAAGTGTCAATGAAACGGAAGAAGAAAGCACACAACTTACCGATAACTCCACTTGA
Protein sequenceShow/hide protein sequence
MNGSEEKYDSIEDENEGWTLVVRRKKQKQSYARKESCLFRDSKRKVKSQRKKGKKKSRRSKPAVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALEIVTCHIVDVVEDD
DVPASSSGTMASPGDLSAFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKRLGYKSPEPIRITRRGKAKVADTNHLTVEEVDDSKEKESVDQRTSVFRGIRPPVALALVSQR
LSVNETEEESTQLTDNST