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Spg035529 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035529
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:2733800..2735156
RNA-Seq ExpressionSpg035529
SyntenySpg035529
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]4.2e-1180.95Show/hide
Query:  VHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        V+TGY+ LLTL+VL DNDA+VSAGRVPLRQR+WECWA PTTS
Subjt:  VHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-1063.08Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        PRGNR SLQT ++ KT              L TLSVLSDNDAVVSAG+ PLRQRRWEC  GPTTS
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]8.8e-0962.5Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        RGNR SLQT +L KT              L TLSVL +NDA VSAGRVPLRQRRWEC  GPTTS
Subjt:  RGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.6e-1563.86Show/hide
Query:  QVESEALFGMVGNLIQFPTPLMKNSPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWEC
        QVESEALF MVG LIQ+PT +MK  PRGNR SLQT +L KT              L TLSVL DND VVSAGR  LRQRRWEC
Subjt:  QVESEALFGMVGNLIQFPTPLMKNSPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWEC

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-1063.08Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        PRGNR SLQT ++ KT              L TLSVLSDNDAVVSAG+ PLRQRRWEC  GPTTS
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.0e-1180.95Show/hide
Query:  VHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        V+TGY+ LLTL+VL DNDA+VSAGRVPLRQR+WECWA PTTS
Subjt:  VHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase2.2e-1063.08Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        PRGNR SLQT ++ KT              L TLSVLSDNDAVVSAG+ PLRQRRWEC  GPTTS
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein4.2e-0962.5Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        RGNR SLQT +L KT              L TLSVL +NDA VSAGRVPLRQRRWEC  GPTTS
Subjt:  RGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

A0A5A7TPS6 Retrotrans_gag domain-containing protein8.0e-1663.86Show/hide
Query:  QVESEALFGMVGNLIQFPTPLMKNSPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWEC
        QVESEALF MVG LIQ+PT +MK  PRGNR SLQT +L KT              L TLSVL DND VVSAGR  LRQRRWEC
Subjt:  QVESEALFGMVGNLIQFPTPLMKNSPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWEC

A0A5D3BTP3 Reverse transcriptase2.2e-1063.08Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS
        PRGNR SLQT ++ KT              L TLSVLSDNDAVVSAG+ PLRQRRWEC  GPTTS
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTACACCTCTCATGAAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCAGTGACAACGATGCTGTCGTGAGTGCTGGACGGGTCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTACACCTCTCATGAAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCAGTGACAACGATGCTGTCGTGAGTGCTGGACGGGTCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGNLIQFPTPLMKNSPRGNRSSLQTRKLAKTPEAIWYRVHTGYILLLTLSVLSDNDAVVSAGRVPLRQR
RWECWAGPTTS