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Spg035533 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035533
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S acidic ribosomal protein P1
Genome locationscaffold3:1064545..1065170
RNA-Seq ExpressionSpg035533
SyntenySpg035533
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7023305.1 unnamed protein product [Microthlaspi erraticum]2.2e-2765.77Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVG-SASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEE
        M TSELACTYAALILHDD I +TA+KIS LVKAA + VESYWP LFAKL  ++NIDDL+++VG     AA P++ A+SAA  A+P   +   KKEEV EE
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVG-SASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEE

Query:  SEDDMVFGLFD
        SEDDMVFGLFD
Subjt:  SEDDMVFGLFD

XP_009111636.1 60S acidic ribosomal protein P1 isoform X2 [Brassica rapa]1.1e-2664.22Show/hide
Query:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEESE
        +TSELACTYAALILHDD I +TA+KI+ LVKAA + VESYWPSLFAKL  ++NIDDL+++VG++  AA P+++   AA  A P+  +   KKEEV EESE
Subjt:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEESE

Query:  DDMVFGLFD
        DDMVFGLFD
Subjt:  DDMVFGLFD

XP_012843499.1 PREDICTED: 60S acidic ribosomal protein P1-like [Erythranthe guttata]6.3e-2766.07Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGS-----ASAAAPPLSMASSAADNAAPTPVQKKEEVME
        MS  E+ACTYAALILHDD I VTA+KI+AL+KAA LTVESYWPSLFAKL  +RNI+DLV++VGS     A A A P   AS+AA  AAP   +KKEE  E
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGS-----ASAAAPPLSMASSAADNAAPTPVQKKEEVME

Query:  ESEDDMVFGLFD
        ES+DDM F LFD
Subjt:  ESEDDMVFGLFD

XP_022138163.1 60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]2.2e-3275.23Show/hide
Query:  ELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVMEESE
        ELACTYAALILHDD I+VTA+KI+ LVKAAGLTVESYWPSLFAKL+S+RNIDDL+L+VGSA+A+A PLSMASS++ +A      AP PV+KKEE +EESE
Subjt:  ELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVMEESE

Query:  DDMVFGLFD
        DD+VFGLFD
Subjt:  DDMVFGLFD

XP_022138164.1 60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]2.4e-3476.11Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVM
        MSTSELACTYAALILHDD I+VTA+KI+ LVKAAGLTVESYWPSLFAKL+S+RNIDDL+L+VGSA+A+A PLSMASS++ +A      AP PV+KKEE +
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVM

Query:  EESEDDMVFGLFD
        EESEDD+VFGLFD
Subjt:  EESEDDMVFGLFD

TrEMBL top hitse value%identityAlignment
A0A6D2I4R4 Uncharacterized protein1.1e-2765.77Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVG-SASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEE
        M TSELACTYAALILHDD I +TA+KIS LVKAA + VESYWP LFAKL  ++NIDDL+++VG     AA P++ A+SAA  A+P   +   KKEEV EE
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVG-SASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEE

Query:  SEDDMVFGLFD
        SEDDMVFGLFD
Subjt:  SEDDMVFGLFD

A0A6J1C9A3 60S acidic ribosomal protein P1-like isoform X21.2e-3476.11Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVM
        MSTSELACTYAALILHDD I+VTA+KI+ LVKAAGLTVESYWPSLFAKL+S+RNIDDL+L+VGSA+A+A PLSMASS++ +A      AP PV+KKEE +
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVM

Query:  EESEDDMVFGLFD
        EESEDD+VFGLFD
Subjt:  EESEDDMVFGLFD

A0A6J1CC92 60S acidic ribosomal protein P1-like isoform X11.1e-3275.23Show/hide
Query:  ELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVMEESE
        ELACTYAALILHDD I+VTA+KI+ LVKAAGLTVESYWPSLFAKL+S+RNIDDL+L+VGSA+A+A PLSMASS++ +A      AP PV+KKEE +EESE
Subjt:  ELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNA------APTPVQKKEEVMEESE

Query:  DDMVFGLFD
        DD+VFGLFD
Subjt:  DDMVFGLFD

A0A6N2K9C3 Uncharacterized protein8.9e-2762.39Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASS--AADNAAPTPVQKKEEVMEESE
        MS  ELACTYA LILHD+DI +T+DKI+ALVK+A +TVESYWPSLFAKLA +RN+ DLV+++G+  AAA P++++SS  AA +AA   V++K+E   ES+
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASS--AADNAAPTPVQKKEEVMEESE

Query:  DDMVFGLFD
        DDM FGLFD
Subjt:  DDMVFGLFD

M4F610 Uncharacterized protein5.2e-2764.22Show/hide
Query:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEESE
        +TSELACTYAALILHDD I +TA+KI+ LVKAA + VESYWPSLFAKL  ++NIDDL+++VG++  AA P+++   AA  A P+  +   KKEEV EESE
Subjt:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQ---KKEEVMEESE

Query:  DDMVFGLFD
        DDMVFGLFD
Subjt:  DDMVFGLFD

SwissProt top hitse value%identityAlignment
P18660 60S acidic ribosomal protein P11.3e-2256.25Show/hide
Query:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGS---ASAAAPPLSMASSAADNAAPTPVQKKEEVMEESE
        S SELAC Y+ALILHDD++TVT DKI+AL+KAAG+ VE +WP LFAK  +  +I  L+ +VG+   A AAA P   A+ A   AAP   +K+EE  EESE
Subjt:  STSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGS---ASAAAPPLSMASSAADNAAPTPVQKKEEVMEESE

Query:  ---DDMVFGLFD
           DDM FGLFD
Subjt:  ---DDMVFGLFD

P29763 60S acidic ribosomal protein P11.7e-2251.4Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQKKEEVMEESEDD
        MSTSELACTYAALILHDD + +TAD I+ + KAAG+ VE YWP+LFAKL +++++DDL+ +VG+   AAP  +  ++    AA    +K+E+     E+D
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQKKEEVMEESEDD

Query:  MVFGLFD
        M F LFD
Subjt:  MVFGLFD

P52855 60S acidic ribosomal protein P13.3e-2659.63Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAP--PLSMASSAADNAAPTPVQKKEEVMEESE
        M++ ELAC YAALIL DD I +TA+KI+ +VKAA + VESYWP+LFAKL  +RN++DL+LSVGS   AAP    + A  AA  AAP   +KKEE  EES+
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAP--PLSMASSAADNAAPTPVQKKEEVMEESE

Query:  DDMVFGLFD
        DDM F LFD
Subjt:  DDMVFGLFD

Q8LCW9 60S acidic ribosomal protein P1-11.7e-2252.68Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+++ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA   AA  P    +KK+E  E
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME

Query:  ESEDDMVFGLFD
        ES+ D+ FGLFD
Subjt:  ESEDDMVFGLFD

Q8LEQ0 60S acidic ribosomal protein P1-37.5e-2353.1Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+T+ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA    AA  P    +KK+E  
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM

Query:  EESEDDMVFGLFD
        EES+ D+ FGLFD
Subjt:  EESEDDMVFGLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.2e-2352.68Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+++ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA   AA  P    +KK+E  E
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME

Query:  ESEDDMVFGLFD
        ES+ D+ FGLFD
Subjt:  ESEDDMVFGLFD

AT1G01100.2 60S acidic ribosomal protein family1.2e-2352.68Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+++ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA   AA  P    +KK+E  E
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAA-DNAAPTPV---QKKEEVME

Query:  ESEDDMVFGLFD
        ES+ D+ FGLFD
Subjt:  ESEDDMVFGLFD

AT5G24510.1 60S acidic ribosomal protein family1.0e-2758.56Show/hide
Query:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSAS-AAAPPLSMASSAADNAAPTPVQKKEE---VMEE
        MSTSELACTYAALILHDD I +TA+ IS LVK A + VESYWPSLFAKL  ++NIDDL+++VG+     A P++ A+  A  +   P +KK E   + EE
Subjt:  MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSAS-AAAPPLSMASSAADNAAPTPVQKKEE---VMEE

Query:  SEDDMVFGLFD
        SEDDM+ GLFD
Subjt:  SEDDMVFGLFD

AT5G47700.1 60S acidic ribosomal protein family5.3e-2453.1Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+T+ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA    AA  P    +KK+E  
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM

Query:  EESEDDMVFGLFD
        EES+ D+ FGLFD
Subjt:  EESEDDMVFGLFD

AT5G47700.2 60S acidic ribosomal protein family5.3e-2453.1Show/hide
Query:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM
        MST  ELAC+YA +IL D+ I +TADKI+ LVKAAG+T+ESYWP LFAK+A +RN+ DL+++VG+      P++ A+ AA    AA  P    +KK+E  
Subjt:  MST-SELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADN--AAPTPV---QKKEEVM

Query:  EESEDDMVFGLFD
        EES+ D+ FGLFD
Subjt:  EESEDDMVFGLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGACATCACCGTCACCGCCGACAAGATCTCCGCATTGGTGAAGGCTGCCGGCCTTAC
CGTCGAATCCTACTGGCCCTCTCTCTTCGCTAAGCTGGCCTCACAAAGGAACATTGACGATCTCGTTCTCAGCGTCGGATCTGCTTCTGCGGCTGCTCCTCCGCTCTCCA
TGGCGTCTTCCGCCGCCGATAATGCCGCTCCAACGCCCGTCCAGAAGAAGGAAGAGGTCATGGAAGAGAGTGAGGATGACATGGTCTTCGGCTTGTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGACATCACCGTCACCGCCGACAAGATCTCCGCATTGGTGAAGGCTGCCGGCCTTAC
CGTCGAATCCTACTGGCCCTCTCTCTTCGCTAAGCTGGCCTCACAAAGGAACATTGACGATCTCGTTCTCAGCGTCGGATCTGCTTCTGCGGCTGCTCCTCCGCTCTCCA
TGGCGTCTTCCGCCGCCGATAATGCCGCTCCAACGCCCGTCCAGAAGAAGGAAGAGGTCATGGAAGAGAGTGAGGATGACATGGTCTTCGGCTTGTTTGATTAG
Protein sequenceShow/hide protein sequence
MSTSELACTYAALILHDDDITVTADKISALVKAAGLTVESYWPSLFAKLASQRNIDDLVLSVGSASAAAPPLSMASSAADNAAPTPVQKKEEVMEESEDDMVFGLFD