; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035550 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035550
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold3:3984234..3985956
RNA-Seq ExpressionSpg035550
SyntenySpg035550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]2.2e-0826.7Show/hide
Query:  YERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL
        +++F N  A+A++ +   R   FE GF       G     +   +T   W+ F   P  VN+ +V+EFYANI K   + + VRG  + ++  AIN  + L
Subjt:  YERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL

Query:  QD-------------------------FPHTGYNEMAAA----------PSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        QD                         F +T +N    +          P  +  N  ++ +L+PT+H++T+S  R+LL  +I+ S  ID+
Subjt:  QD-------------------------FPHTGYNEMAAA----------PSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

KAE8695166.1 hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]5.1e-1029.26Show/hide
Query:  FVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL---
        FV+  A+  Y  +  R   FE GF      + +L   +   +T H W+ F   P PVN+ +V+EFY+NI +     V+VRG+++ ++  AIN  +KL   
Subjt:  FVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL---

Query:  --------QDFPHTGYN---EMAAAP----SNEQL-----------------NVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
                Q+  H  Y    E    P    + +QL                 N  ++ +L+PT+H++T+S +R+LL  +IL   +IDI
Subjt:  --------QDFPHTGYN---EMAAAP----SNEQL-----------------NVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

KAE8712804.1 hypothetical protein F3Y22_tig00110223pilonHSYRG00028 [Hibiscus syriacus]1.5e-0928.5Show/hide
Query:  VERKTVEDETKKKKNEDKGKCIVGADAEMEVARPKERRLPYERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPV
        V+ K ++D +  K N  + K   G    +   R K   L ++  V+  A  +Y  +  R   FE GF        DL   +   +T H W+ F   P  V
Subjt:  VERKTVEDETKKKKNEDKGKCIVGADAEMEVARPKERRLPYERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPV

Query:  NSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL----QDFPHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        N+ +V+EFY+NI +     ++V G+++ ++  AIN  +KL    Q       +     P  +  N  ++ +LLPT+H++T+S +R++L  +I+  L+IDI
Subjt:  NSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL----QDFPHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

PIN26832.1 hypothetical protein CDL12_00419 [Handroanthus impetiginosus]4.8e-0830.65Show/hide
Query:  MEVARPKERRLPYE----------RFVNHFARAKYID-MLKRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANI--DKEEGFQVI
        M   RP +RR   E          RF++  A + + + +L R  + ERG  G     +      H WE F + P+  N  +V EFYAN+    ++   V+
Subjt:  MEVARPKERRLPYE----------RFVNHFARAKYID-MLKRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANI--DKEEGFQVI

Query:  VRGVAVDWSLGAINSLY---------KLQDF--PHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        VRG  +++S   I+SL+         ++Q+F   H     +    S+  L   V  RLLP++H S ++RER ++ FAIL  +S DI
Subjt:  VRGVAVDWSLGAINSLY---------KLQDF--PHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]3.5e-1123.46Show/hide
Query:  KRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKLQDFPHTGYNEM------------
        ++ F+ +   +   L F+   IT H W+ FC+ P+     +VREFYAN+   E   V VRGV V WS  AIN+++ L D P   ++E             
Subjt:  KRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKLQDFPHTGYNEM------------

Query:  --AAAPSNEQLNVA----------------------VRERLLPTTHDSTISRERVLLAFAILRSLSIDIA------------------------------
            A +  + NV+                      ++ RLLPTTH  T+S++R+LL  ++L   SI++                               
Subjt:  --AAAPSNEQLNVA----------------------VRERLLPTTHDSTISRERVLLAFAILRSLSIDIA------------------------------

Query:  ------------------------------------------------------------------SRQE-----------FTERQAHTFWNYVKRRDAA
                                                                          S+QE            T +Q   FW Y K RD A
Subjt:  ------------------------------------------------------------------SRQE-----------FTERQAHTFWNYVKRRDAA

Query:  LRKALQENFSKPYPALPVFPDDML
        L+KALQ NF++P P  P FP ++L
Subjt:  LRKALQENFSKPYPALPVFPDDML

TrEMBL top hitse value%identityAlignment
A0A2G9IAP8 Uncharacterized protein2.3e-0830.65Show/hide
Query:  MEVARPKERRLPYE----------RFVNHFARAKYID-MLKRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANI--DKEEGFQVI
        M   RP +RR   E          RF++  A + + + +L R  + ERG  G     +      H WE F + P+  N  +V EFYAN+    ++   V+
Subjt:  MEVARPKERRLPYE----------RFVNHFARAKYID-MLKRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANI--DKEEGFQVI

Query:  VRGVAVDWSLGAINSLY---------KLQDF--PHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        VRG  +++S   I+SL+         ++Q+F   H     +    S+  L   V  RLLP++H S ++RER ++ FAIL  +S DI
Subjt:  VRGVAVDWSLGAINSLY---------KLQDF--PHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

A0A2P5BCG4 Uncharacterized protein (Fragment)1.7e-1123.46Show/hide
Query:  KRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKLQDFPHTGYNEM------------
        ++ F+ +   +   L F+   IT H W+ FC+ P+     +VREFYAN+   E   V VRGV V WS  AIN+++ L D P   ++E             
Subjt:  KRDFLFERGFSGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKLQDFPHTGYNEM------------

Query:  --AAAPSNEQLNVA----------------------VRERLLPTTHDSTISRERVLLAFAILRSLSIDIA------------------------------
            A +  + NV+                      ++ RLLPTTH  T+S++R+LL  ++L   SI++                               
Subjt:  --AAAPSNEQLNVA----------------------VRERLLPTTHDSTISRERVLLAFAILRSLSIDIA------------------------------

Query:  ------------------------------------------------------------------SRQE-----------FTERQAHTFWNYVKRRDAA
                                                                          S+QE            T +Q   FW Y K RD A
Subjt:  ------------------------------------------------------------------SRQE-----------FTERQAHTFWNYVKRRDAA

Query:  LRKALQENFSKPYPALPVFPDDML
        L+KALQ NF++P P  P FP ++L
Subjt:  LRKALQENFSKPYPALPVFPDDML

A0A6A2WM54 Uncharacterized protein1.0e-0826.7Show/hide
Query:  YERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL
        +++F N  A+A++ +   R   FE GF       G     +   +T   W+ F   P  VN+ +V+EFYANI K   + + VRG  + ++  AIN  + L
Subjt:  YERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL

Query:  QD-------------------------FPHTGYNEMAAA----------PSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        QD                         F +T +N    +          P  +  N  ++ +L+PT+H++T+S  R+LL  +I+ S  ID+
Subjt:  QD-------------------------FPHTGYNEMAAA----------PSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

A0A6A2ZUE4 Uncharacterized protein2.5e-1029.26Show/hide
Query:  FVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL---
        FV+  A+  Y  +  R   FE GF      + +L   +   +T H W+ F   P PVN+ +V+EFY+NI +     V+VRG+++ ++  AIN  +KL   
Subjt:  FVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL---

Query:  --------QDFPHTGYN---EMAAAP----SNEQL-----------------NVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
                Q+  H  Y    E    P    + +QL                 N  ++ +L+PT+H++T+S +R+LL  +IL   +IDI
Subjt:  --------QDFPHTGYN---EMAAAP----SNEQL-----------------NVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

A0A6A3B6J9 RT_RNaseH_2 domain-containing protein7.2e-1028.5Show/hide
Query:  VERKTVEDETKKKKNEDKGKCIVGADAEMEVARPKERRLPYERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPV
        V+ K ++D +  K N  + K   G    +   R K   L ++  V+  A  +Y  +  R   FE GF        DL   +   +T H W+ F   P  V
Subjt:  VERKTVEDETKKKKNEDKGKCIVGADAEMEVARPKERRLPYERFVNHFARAKYIDMLKRDFLFERGF------SGDLLRFLRASITNHGWELFCSKPKPV

Query:  NSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL----QDFPHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI
        N+ +V+EFY+NI +     ++V G+++ ++  AIN  +KL    Q       +     P  +  N  ++ +LLPT+H++T+S +R++L  +I+  L+IDI
Subjt:  NSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKL----QDFPHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCTTCATTTAAATCAAACCCAGAGTGCAAAGAAGTTTTCTATTCTAAATGGCAAAACGAGAGGACGAAAAGAGAGAGAAGTAGAGGAGGATGTACCTATTAC
GCCAGAAGCTTCGAAGAAGAAAGCAAAGAAGAAAAGAACGCCTGCGGAAAGGGAAGCTAAGCGGCTTAAAAGACTTCAAGAAGCTGAGGTTTCTGAATTATTACAGAAGG
TCATCAAGGACATTGCTGAAGAAGTAGTCACTGAGGAAGAACCGAAAGATTCTAAAAAAGAAAAAGATTTTGAGAAGATTGATGGAACAGAGCAAGAGAGTCAAGAAAAG
GCAGCATCAGATTTGCAAGGGCAAGAAAAAAAGGAACCTGAAAATCAAGAAGAGGTTGAGAGGAAGACTGTAGAAGACGAAACTAAGAAGAAGAAAAATGAAGATAAGGG
CAAATGTATTGTAGGAGCAGATGCTGAAATGGAAGTGGCACGACCAAAGGAAAGAAGGTTGCCATATGAGCGCTTTGTCAATCATTTTGCTAGGGCAAAATATATTGACA
TGTTGAAGAGAGATTTCCTGTTTGAGAGAGGGTTCAGTGGTGATCTTCTGCGCTTTTTGAGGGCTAGCATCACAAATCATGGCTGGGAGTTATTCTGTTCCAAGCCAAAG
CCTGTGAATTCACAAGTGGTTCGAGAATTCTATGCGAACATTGACAAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTAGCTGTCGACTGGAGTCTTGGAGCCATCAA
TTCACTGTACAAACTTCAAGATTTCCCGCATACTGGTTATAATGAGATGGCAGCAGCACCATCTAACGAGCAGTTAAACGTTGCTGTTCGGGAAAGGCTGCTTCCTACAA
CTCATGACTCCACGATCTCGCGGGAAAGAGTTCTTCTGGCTTTTGCAATACTACGGTCTCTCAGCATCGATATAGCTAGCAGGCAAGAGTTCACCGAAAGGCAAGCTCAT
ACCTTCTGGAATTATGTTAAAAGACGTGATGCCGCTTTGAGGAAGGCACTACAAGAAAACTTTTCAAAGCCCTACCCAGCCCTTCCTGTATTCCCAGATGATATGTTGAA
CCCTTGGATCCCACCACTACCCGTAGAGAGAGCGAAGAAAGATGATGATGCTGGTCAGGAGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCTTCATTTAAATCAAACCCAGAGTGCAAAGAAGTTTTCTATTCTAAATGGCAAAACGAGAGGACGAAAAGAGAGAGAAGTAGAGGAGGATGTACCTATTAC
GCCAGAAGCTTCGAAGAAGAAAGCAAAGAAGAAAAGAACGCCTGCGGAAAGGGAAGCTAAGCGGCTTAAAAGACTTCAAGAAGCTGAGGTTTCTGAATTATTACAGAAGG
TCATCAAGGACATTGCTGAAGAAGTAGTCACTGAGGAAGAACCGAAAGATTCTAAAAAAGAAAAAGATTTTGAGAAGATTGATGGAACAGAGCAAGAGAGTCAAGAAAAG
GCAGCATCAGATTTGCAAGGGCAAGAAAAAAAGGAACCTGAAAATCAAGAAGAGGTTGAGAGGAAGACTGTAGAAGACGAAACTAAGAAGAAGAAAAATGAAGATAAGGG
CAAATGTATTGTAGGAGCAGATGCTGAAATGGAAGTGGCACGACCAAAGGAAAGAAGGTTGCCATATGAGCGCTTTGTCAATCATTTTGCTAGGGCAAAATATATTGACA
TGTTGAAGAGAGATTTCCTGTTTGAGAGAGGGTTCAGTGGTGATCTTCTGCGCTTTTTGAGGGCTAGCATCACAAATCATGGCTGGGAGTTATTCTGTTCCAAGCCAAAG
CCTGTGAATTCACAAGTGGTTCGAGAATTCTATGCGAACATTGACAAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTAGCTGTCGACTGGAGTCTTGGAGCCATCAA
TTCACTGTACAAACTTCAAGATTTCCCGCATACTGGTTATAATGAGATGGCAGCAGCACCATCTAACGAGCAGTTAAACGTTGCTGTTCGGGAAAGGCTGCTTCCTACAA
CTCATGACTCCACGATCTCGCGGGAAAGAGTTCTTCTGGCTTTTGCAATACTACGGTCTCTCAGCATCGATATAGCTAGCAGGCAAGAGTTCACCGAAAGGCAAGCTCAT
ACCTTCTGGAATTATGTTAAAAGACGTGATGCCGCTTTGAGGAAGGCACTACAAGAAAACTTTTCAAAGCCCTACCCAGCCCTTCCTGTATTCCCAGATGATATGTTGAA
CCCTTGGATCCCACCACTACCCGTAGAGAGAGCGAAGAAAGATGATGATGCTGGTCAGGAGGACTAA
Protein sequenceShow/hide protein sequence
MLKLHLNQTQSAKKFSILNGKTRGRKEREVEEDVPITPEASKKKAKKKRTPAEREAKRLKRLQEAEVSELLQKVIKDIAEEVVTEEEPKDSKKEKDFEKIDGTEQESQEK
AASDLQGQEKKEPENQEEVERKTVEDETKKKKNEDKGKCIVGADAEMEVARPKERRLPYERFVNHFARAKYIDMLKRDFLFERGFSGDLLRFLRASITNHGWELFCSKPK
PVNSQVVREFYANIDKEEGFQVIVRGVAVDWSLGAINSLYKLQDFPHTGYNEMAAAPSNEQLNVAVRERLLPTTHDSTISRERVLLAFAILRSLSIDIASRQEFTERQAH
TFWNYVKRRDAALRKALQENFSKPYPALPVFPDDMLNPWIPPLPVERAKKDDDAGQED