; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:3262535..3267118
RNA-Seq ExpressionSpg035584
SyntenySpg035584
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN69412.1 hypothetical protein VITISV_021748, partial [Vitis vinifera]7.2e-1832.54Show/hide
Query:  LCIRLIPKKSGGRGTKGKNN---KNQIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYG
        L IR++           KN      + KR+I     +  +W  R + W++L    ASG +V+MW   + K I+ V G FS+SV      E  FW+TSVYG
Subjt:  LCIRLIPKKSGGRGTKGKNN---KNQIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYG

Query:  PSRSKGRAKLWQELYDL--VAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKK
        P++   R   W EL +L  + F +  +   + +P+F+     WW++  +E W G +FM KLK +K + K
Subjt:  PSRSKGRAKLWQELYDL--VAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKK

OVA05651.1 Reverse transcriptase zinc-binding domain [Macleaya cordata]8.0e-1727.05Show/hide
Query:  QIKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGP-----SRSKGRAKLW-----QELYD----
        Q+   I+K+IW    +GW+SL+  G SGG++++W+++  +  DVV G     ++ +F    L+  ++V        +   G    W     + LYD    
Subjt:  QIKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGP-----SRSKGRAKLW-----QELYD----

Query:  --LVAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVNFFLWTLALNNINTMDKVQRRYPSLQISSN
          +   ++  +  +   PD     + WW++ N   +      D +            +  S +W    RV FFLW     +I T+D +Q+R  SL    N
Subjt:  --LVAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVNFFLWTLALNNINTMDKVQRRYPSLQISSN

Query:  ISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEVLVGGGLKGKAKVLWRNFSRAIIWHLWKERNA
           +C    E  + LL+HC+++ K+W+ F           +SV   L+E      L  + KVLWR    AI W +WKERNA
Subjt:  ISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEVLVGGGLKGKAKVLWRNFSRAIIWHLWKERNA

RVW44805.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.5e-1937.23Show/hide
Query:  QIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL--VAFAVE
        + KR+I     +  +W  R + W++L   GASGGIV+MW   + K+ + V G FSV+V      E  FW+TSVYGP++   R   W EL DL  + F + 
Subjt:  QIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL--VAFAVE

Query:  SDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLK
         ++  +  P+F+     WW++  +E W G +FM KLK
Subjt:  SDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLK

RVW60988.1 putative ribonuclease H protein [Vitis vinifera]8.0e-1732.26Show/hide
Query:  IKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDLVAFAVE-------------
        +  +W  R + W++L   GASGGIV++W   + K  + V G FS++V    + E  FW+TSVYGP++   R   W EL DL                   
Subjt:  IKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDLVAFAVE-------------

Query:  -----SDSRM----MSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGD
              DSR     +  P+F+     WW++  +E W G +FM KLK   +E++G+
Subjt:  -----SDSRM----MSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGD

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.2e-1545.35Show/hide
Query:  IKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL
        I    IK +WSS  I W+SL+  GASGGI+++W +  + A++V+ G FS+SVHF+  +   +W+T VY P + K R   WQEL+DL
Subjt:  IKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL

TrEMBL top hitse value%identityAlignment
A0A200Q5B2 Reverse transcriptase zinc-binding domain3.9e-1727.05Show/hide
Query:  QIKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGP-----SRSKGRAKLW-----QELYD----
        Q+   I+K+IW    +GW+SL+  G SGG++++W+++  +  DVV G     ++ +F    L+  ++V        +   G    W     + LYD    
Subjt:  QIKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGP-----SRSKGRAKLW-----QELYD----

Query:  --LVAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVNFFLWTLALNNINTMDKVQRRYPSLQISSN
          +   ++  +  +   PD     + WW++ N   +      D +            +  S +W    RV FFLW     +I T+D +Q+R  SL    N
Subjt:  --LVAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVNFFLWTLALNNINTMDKVQRRYPSLQISSN

Query:  ISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEVLVGGGLKGKAKVLWRNFSRAIIWHLWKERNA
           +C    E  + LL+HC+++ K+W+ F           +SV   L+E      L  + KVLWR    AI W +WKERNA
Subjt:  ISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEVLVGGGLKGKAKVLWRNFSRAIIWHLWKERNA

A0A2N9J944 zf-RVT domain-containing protein5.0e-1724.63Show/hide
Query:  IKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWV-TSVYGPSRSKGRAKLWQEL----------------
        I   +++ IW S ++ W+SL   GASGGI+VMW ++  + ++   G  S+S+ F+   ++  W+ T VYGP+    RA LW+EL                
Subjt:  IKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWV-TSVYGPSRSKGRAKLWQEL----------------

Query:  YDLVAFAVES------DSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVN-----------------------
        +++  F  E        S M  F +F + +         +    F   +KLK +K++ K    E    I  G K+ N                       
Subjt:  YDLVAFAVES------DSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVN-----------------------

Query:  ---------------------FFLWTLALNNINTMDKVQRRYPSLQISSNISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEV
                             + +   A+  I T+D ++RR     +  N   MC KS E  + L LHC  A ++W+     F  +    S V   L   
Subjt:  ---------------------FFLWTLALNNINTMDKVQRRYPSLQISSNISVMCLKSEEMASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEV

Query:  LVGGGLKGKAKVLWRNFSRAIIWHLWKERNARVLPDK
          G G     ++ WR     ++W +W ERN+R   DK
Subjt:  LVGGGLKGKAKVLWRNFSRAIIWHLWKERNARVLPDK

A0A438EAH6 Transposon TX1 uncharacterized 149 kDa protein4.1e-1937.23Show/hide
Query:  QIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL--VAFAVE
        + KR+I     +  +W  R + W++L   GASGGIV+MW   + K+ + V G FSV+V      E  FW+TSVYGP++   R   W EL DL  + F + 
Subjt:  QIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDL--VAFAVE

Query:  SDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLK
         ++  +  P+F+     WW++  +E W G +FM KLK
Subjt:  SDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLK

A0A438FLV0 Putative ribonuclease H protein3.9e-1732.26Show/hide
Query:  IKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDLVAFAVE-------------
        +  +W  R + W++L   GASGGIV++W   + K  + V G FS++V    + E  FW+TSVYGP++   R   W EL DL                   
Subjt:  IKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQELYDLVAFAVE-------------

Query:  -----SDSRM----MSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGD
              DSR     +  P+F+     WW++  +E W G +FM KLK   +E++G+
Subjt:  -----SDSRM----MSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGD

A5AV73 Reverse transcriptase domain-containing protein (Fragment)3.5e-1832.54Show/hide
Query:  LCIRLIPKKSGGRGTKGKNN---KNQIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYG
        L IR++           KN      + KR+I     +  +W  R + W++L    ASG +V+MW   + K I+ V G FS+SV      E  FW+TSVYG
Subjt:  LCIRLIPKKSGGRGTKGKNN---KNQIKRQI-KGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYG

Query:  PSRSKGRAKLWQELYDL--VAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKK
        P++   R   W EL +L  + F +  +   + +P+F+     WW++  +E W G +FM KLK +K + K
Subjt:  PSRSKGRAKLWQELYDL--VAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGCGAATCAAGTTGGGACGGTCAGAAAACGACTTTGAGTCAAGAAGAGCCCATAGAAGATATTGCAACCATGTTTGGGACAGATGAAAAAGAAGCCACATATCA
TAGTCAAGAAGAGAGGTTGGCCATAGTGTCAAAGGAGATCCGAGAGGAGGAATGCTTAGAAATCAGTCCGATTAGAGTTGAGGAGGAGACCGTTAGTGATTCCTCAAGAG
ATGGCAATTTGTTAAAAAGTCCAGTAAACTTGATCAGTAATCGAGAAGTGGGACCGAGGATAGATATTCCAATTTTAAAGGAGACTATTGAGATTTTATGGCAAAATGGG
CTCTGTATTAGGCTGATCCCTAAGAAGAGTGGGGGCAGGGGAACAAAAGGGAAGAACAATAAGAATCAGATTAAAAGGCAGATAAAAGGAAGTATCATCAAGCAGATTTG
GAGCTCCCGTTTTATAGGCTGGTCTTCGTTAAATTTGGAGGGAGCCTCCGGGGGCATTGTGGTGATGTGGAAAGAGAAGGAATCCAAAGCGATTGATGTGGTATCAGGCA
GGTTCTCCGTGTCAGTGCACTTTGAATTTGAGAATGAGAAGCTTTTTTGGGTGACTAGTGTTTATGGTCCAAGCCGATCTAAGGGCAGAGCTAAGTTGTGGCAGGAGTTG
TATGATCTAGTGGCCTTTGCAGTAGAGTCTGATTCGAGAATGATGTCTTTTCCTGATTTTAGAAATCTGGTTGATGGTTGGTGGAAGCAGTTAAATATTGAGAGGTGGGT
TGGTTTTCAGTTCATGGATAAACTGAAAGGCATCAAAGTCGAGAAGAAGGGTGATGGTTGGGAGTTGAGCTCTCAAATTTGGAAGGGAACTAAAAGGGTAAATTTCTTTC
TATGGACCCTAGCTCTCAACAATATAAACACGATGGATAAGGTGCAAAGAAGATATCCTAGCCTTCAAATTTCCTCGAACATTAGTGTAATGTGCCTTAAAAGTGAGGAA
ATGGCCTCTCTCCTTTTGCTTCATTGTGAATTTGCAGATAAGGTTTGGAATCGGTTTGCTGAAGCTTTTAGGCAGGAGGGTTGTAAGCTTAGCAGTGTGTCAGATTGGCT
GATTGAGGTGTTGGTTGGAGGAGGGTTAAAGGGCAAAGCCAAAGTCCTTTGGAGGAATTTCTCTAGAGCTATCATTTGGCACTTGTGGAAGGAAAGAAATGCGAGGGTGC
TCCCAGATAAATTCTTGCCTATCGATATTTTTTGTGATGTTGTACAGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGCGAATCAAGTTGGGACGGTCAGAAAACGACTTTGAGTCAAGAAGAGCCCATAGAAGATATTGCAACCATGTTTGGGACAGATGAAAAAGAAGCCACATATCA
TAGTCAAGAAGAGAGGTTGGCCATAGTGTCAAAGGAGATCCGAGAGGAGGAATGCTTAGAAATCAGTCCGATTAGAGTTGAGGAGGAGACCGTTAGTGATTCCTCAAGAG
ATGGCAATTTGTTAAAAAGTCCAGTAAACTTGATCAGTAATCGAGAAGTGGGACCGAGGATAGATATTCCAATTTTAAAGGAGACTATTGAGATTTTATGGCAAAATGGG
CTCTGTATTAGGCTGATCCCTAAGAAGAGTGGGGGCAGGGGAACAAAAGGGAAGAACAATAAGAATCAGATTAAAAGGCAGATAAAAGGAAGTATCATCAAGCAGATTTG
GAGCTCCCGTTTTATAGGCTGGTCTTCGTTAAATTTGGAGGGAGCCTCCGGGGGCATTGTGGTGATGTGGAAAGAGAAGGAATCCAAAGCGATTGATGTGGTATCAGGCA
GGTTCTCCGTGTCAGTGCACTTTGAATTTGAGAATGAGAAGCTTTTTTGGGTGACTAGTGTTTATGGTCCAAGCCGATCTAAGGGCAGAGCTAAGTTGTGGCAGGAGTTG
TATGATCTAGTGGCCTTTGCAGTAGAGTCTGATTCGAGAATGATGTCTTTTCCTGATTTTAGAAATCTGGTTGATGGTTGGTGGAAGCAGTTAAATATTGAGAGGTGGGT
TGGTTTTCAGTTCATGGATAAACTGAAAGGCATCAAAGTCGAGAAGAAGGGTGATGGTTGGGAGTTGAGCTCTCAAATTTGGAAGGGAACTAAAAGGGTAAATTTCTTTC
TATGGACCCTAGCTCTCAACAATATAAACACGATGGATAAGGTGCAAAGAAGATATCCTAGCCTTCAAATTTCCTCGAACATTAGTGTAATGTGCCTTAAAAGTGAGGAA
ATGGCCTCTCTCCTTTTGCTTCATTGTGAATTTGCAGATAAGGTTTGGAATCGGTTTGCTGAAGCTTTTAGGCAGGAGGGTTGTAAGCTTAGCAGTGTGTCAGATTGGCT
GATTGAGGTGTTGGTTGGAGGAGGGTTAAAGGGCAAAGCCAAAGTCCTTTGGAGGAATTTCTCTAGAGCTATCATTTGGCACTTGTGGAAGGAAAGAAATGCGAGGGTGC
TCCCAGATAAATTCTTGCCTATCGATATTTTTTGTGATGTTGTACAGCTTTAG
Protein sequenceShow/hide protein sequence
MASESSWDGQKTTLSQEEPIEDIATMFGTDEKEATYHSQEERLAIVSKEIREEECLEISPIRVEEETVSDSSRDGNLLKSPVNLISNREVGPRIDIPILKETIEILWQNG
LCIRLIPKKSGGRGTKGKNNKNQIKRQIKGSIIKQIWSSRFIGWSSLNLEGASGGIVVMWKEKESKAIDVVSGRFSVSVHFEFENEKLFWVTSVYGPSRSKGRAKLWQEL
YDLVAFAVESDSRMMSFPDFRNLVDGWWKQLNIERWVGFQFMDKLKGIKVEKKGDGWELSSQIWKGTKRVNFFLWTLALNNINTMDKVQRRYPSLQISSNISVMCLKSEE
MASLLLLHCEFADKVWNRFAEAFRQEGCKLSSVSDWLIEVLVGGGLKGKAKVLWRNFSRAIIWHLWKERNARVLPDKFLPIDIFCDVVQL