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Spg035605 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035605
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold3:2643077..2648145
RNA-Seq ExpressionSpg035605
SyntenySpg035605
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025450.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1238.69Show/hide
Query:  SRSKETQ-HEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFIS-PSQQPNKTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS+E Q  ED     +A  +  +++K  +  I   ENL + +  S P +   +   P++MSV++TD +TSE+RM E+EKK+++L++ VE +D EIASLK
Subjt:  SRSKETQ-HEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFIS-PSQQPNKTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKNRGTWKFPEMRPHFWQGKNQMRPHF
        NH+ESRD A+S+N   W + ++ P       Q+   F
Subjt:  NHMESRDVAESKNRGTWKFPEMRPHFWQGKNQMRPHF

KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1244.07Show/hide
Query:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS+E Q  +   P  +A  +  +++K  +  I   EN  + ++ S S+  N +   P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIA LK
Subjt:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKNRGTWK
        NH+ESRD AES +  T K
Subjt:  NHMESRDVAESKNRGTWK

KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-1445.22Show/hide
Query:  SRSKETQHEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLKN
        SRS+E Q  +   P    K+  +++K  + E+   EN  + +  S S++ N + S P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIA LKN
Subjt:  SRSKETQHEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLKN

Query:  HMESRDVAESKNRGT
        H+ESRD AES +  T
Subjt:  HMESRDVAESKNRGT

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1244.25Show/hide
Query:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTS-SPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS++ Q  +   P  +AN +  +++K  +  I   EN  + +  S S++ N+ +  P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIASLK
Subjt:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTS-SPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKN
        NH+ESRD  ES +
Subjt:  NHMESRDVAESKN

KAA0056609.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1244.17Show/hide
Query:  SRSKETQ-HEDSQTP--VIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTSS-PDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIAS
        SRS+ETQ +ED   P   +A     +++K  +  I   ENL++ +  S S+  ++  S P++MSVM+   +TSE++M+E+EKKI++L+K +E KD+EIAS
Subjt:  SRSKETQ-HEDSQTP--VIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTSS-PDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIAS

Query:  LKNHMESRDVAESKNRGTWK
        LKNH+ESRD  ES +  T K
Subjt:  LKNHMESRDVAESKNRGTWK

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein9.6e-1344.07Show/hide
Query:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS+E Q  +   P  +A  +  +++K  +  I   EN  + ++ S S+  N +   P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIA LK
Subjt:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKNRGTWK
        NH+ESRD AES +  T K
Subjt:  NHMESRDVAESKNRGTWK

A0A5A7TP10 Ty3-gypsy retrotransposon protein3.9e-1445.22Show/hide
Query:  SRSKETQHEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLKN
        SRS+E Q  +   P    K+  +++K  + E+   EN  + +  S S++ N + S P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIA LKN
Subjt:  SRSKETQHEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPN-KTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLKN

Query:  HMESRDVAESKNRGT
        H+ESRD AES +  T
Subjt:  HMESRDVAESKNRGT

A0A5A7U9H0 Ty3-gypsy retrotransposon protein9.6e-1344.25Show/hide
Query:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTS-SPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS++ Q  +   P  +AN +  +++K  +  I   EN  + +  S S++ N+ +  P++MSVM+TD +TSE+RMAE+EKK+++L+K VE +D EIASLK
Subjt:  SRSKETQHEDSQTPV-IANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTS-SPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKN
        NH+ESRD  ES +
Subjt:  NHMESRDVAESKN

A0A5D3C0N7 Ty3-gypsy retrotransposon protein5.6e-1338.69Show/hide
Query:  SRSKETQ-HEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFIS-PSQQPNKTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK
        SRS+E Q  ED     +A  +  +++K  +  I   ENL + +  S P +   +   P++MSV++TD +TSE+RM E+EKK+++L++ VE +D EIASLK
Subjt:  SRSKETQ-HEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFIS-PSQQPNKTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLK

Query:  NHMESRDVAESKNRGTWKFPEMRPHFWQGKNQMRPHF
        NH+ESRD A+S+N   W + ++ P       Q+   F
Subjt:  NHMESRDVAESKNRGTWKFPEMRPHFWQGKNQMRPHF

A0A5D3DLA7 Ty3-gypsy retrotransposon protein9.6e-1344.17Show/hide
Query:  SRSKETQ-HEDSQTP--VIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTSS-PDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIAS
        SRS+ETQ +ED   P   +A     +++K  +  I   ENL++ +  S S+  ++  S P++MSVM+   +TSE++M+E+EKKI++L+K +E KD+EIAS
Subjt:  SRSKETQ-HEDSQTP--VIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTSS-PDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIAS

Query:  LKNHMESRDVAESKNRGTWK
        LKNH+ESRD  ES +  T K
Subjt:  LKNHMESRDVAESKNRGTWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATCGCAAACAAGATGCTAAGACGCATGACAAAATTTGCTCAACTTGAAATCGCCACTGC
AGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAACAAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATGCAGAGACTAGTGAAGAAC
GAATGGCTGAAGTTGAGAAGAAAATCAGCATATTACTGAAGATGGTCGAAGGGAAAGACCATGAAATCGCCTCTCTCAAGAACCATATGGAAAGTCGGGATGTTGCTGAA
TCGAAAAATAGAGGAACCTGGAAATTCCCAGAAATGCGACCGCATTTCTGGCAAGGCAAAAATCAAATGCGACCGCATTTCTGGGTAGAGGCAGACAGTTTCGAGTCCGT
CGCAGGTCCATTAGGTCCCACTGGTAGCTCGCTCCCTCTAGACTCCCACCAGTCTCCTGCTTCTAGAAGTCTCAAAGTCATACCGGTGAAAACAGAGGAGAAGCTGGAAT
TTGCCCAGAAATGCGACCGCATTTCTAGAAAAACAGAGGCAGTTCCGAGTCTACTGCGGGTCATTTTGAACGAGACTTCTTTGCACCTAACCGACTGTTTTGACCCCGAA
ACCGACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCAACACTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATCGCAAACAAGATGCTAAGACGCATGACAAAATTTGCTCAACTTGAAATCGCCACTGC
AGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAACAAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATGCAGAGACTAGTGAAGAAC
GAATGGCTGAAGTTGAGAAGAAAATCAGCATATTACTGAAGATGGTCGAAGGGAAAGACCATGAAATCGCCTCTCTCAAGAACCATATGGAAAGTCGGGATGTTGCTGAA
TCGAAAAATAGAGGAACCTGGAAATTCCCAGAAATGCGACCGCATTTCTGGCAAGGCAAAAATCAAATGCGACCGCATTTCTGGGTAGAGGCAGACAGTTTCGAGTCCGT
CGCAGGTCCATTAGGTCCCACTGGTAGCTCGCTCCCTCTAGACTCCCACCAGTCTCCTGCTTCTAGAAGTCTCAAAGTCATACCGGTGAAAACAGAGGAGAAGCTGGAAT
TTGCCCAGAAATGCGACCGCATTTCTAGAAAAACAGAGGCAGTTCCGAGTCTACTGCGGGTCATTTTGAACGAGACTTCTTTGCACCTAACCGACTGTTTTGACCCCGAA
ACCGACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCAACACTATATAA
Protein sequenceShow/hide protein sequence
MSSRSKETQHEDSQTPVIANKMLRRMTKFAQLEIATAENLMLGKFISPSQQPNKTSSPDVMSVMMTDAETSEERMAEVEKKISILLKMVEGKDHEIASLKNHMESRDVAE
SKNRGTWKFPEMRPHFWQGKNQMRPHFWVEADSFESVAGPLGPTGSSLPLDSHQSPASRSLKVIPVKTEEKLEFAQKCDRISRKTEAVPSLLRVILNETSLHLTDCFDPE
TDWATYQHLFRSSSTISNTI