; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035618 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035618
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold3:2470816..2484059
RNA-Seq ExpressionSpg035618
SyntenySpg035618
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2057.41Show/hide
Query:  EEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVSCD
        EEVDNS + +QRTS+FD IKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M +L+ K F E + D
Subjt:  EEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVSCD

Query:  KKLQRISP
         K+    P
Subjt:  KKLQRISP

KAA0051228.1 hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa]1.1e-2055.37Show/hide
Query:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD
        E +N   SY    EE+DNS + +QRTSIFDHIKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M 
Subjt:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD

Query:  NLEVKLFDEVSCDKKLQRISP
        +L+ K F E + D K+    P
Subjt:  NLEVKLFDEVSCDKKLQRISP

KAA0054464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]5.2e-2052.67Show/hide
Query:  VEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTS-NRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVS
        +EEVDNS + +QRTS+FD IKPSITR S+FQR+S+A  EEENQC  STS  R LAF+RLS+ T +K   ST  FDRLK+A+DQ QR +  L+ K F E +
Subjt:  VEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTS-NRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVS

Query:  CDKKLQRISPKF-EVSHVDALQFLLSKFEGF
           K+ + S  F E  H    +F   KF+GF
Subjt:  CDKKLQRISPKF-EVSHVDALQFLLSKFEGF

KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-2055.17Show/hide
Query:  IDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLF-DE
        +  EEVDNS + +QRT +FD IKPS TR SVFQR+SM   EEENQC MSTS +   F+RLS+ST +K   STS FDRLK A+DQ QR M  L+ KLF +E
Subjt:  IDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLF-DE

Query:  VSCDKKL-QRISPKFE
         + D K+  R+S + +
Subjt:  VSCDKKL-QRISPKFE

KAA0066532.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-2156.2Show/hide
Query:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD
        E +N   SY    EEVDNS + +QRTSIFDHIKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M 
Subjt:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD

Query:  NLEVKLFDEVSCDKKLQRISP
        +L+ K F E + D K+    P
Subjt:  NLEVKLFDEVSCDKKLQRISP

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.5e-2057.41Show/hide
Query:  EEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVSCD
        EEVDNS + +QRTS+FD IKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M +L+ K F E + D
Subjt:  EEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLFDEVSCD

Query:  KKLQRISP
         K+    P
Subjt:  KKLQRISP

A0A5A7U7F9 Uncharacterized protein5.1e-2155.37Show/hide
Query:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD
        E +N   SY    EE+DNS + +QRTSIFDHIKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M 
Subjt:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD

Query:  NLEVKLFDEVSCDKKLQRISP
        +L+ K F E + D K+    P
Subjt:  NLEVKLFDEVSCDKKLQRISP

A0A5A7U974 Retrotransposon gag protein2.5e-2056.03Show/hide
Query:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD
        E +N   SY    EEVDNS + +QRTS+FD IKP  TR SVFQR+SMA  EEENQC MST  R  AF+RLS+S  +K   STS FDRLK+ +DQ QR M 
Subjt:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD

Query:  NLEVKLFDEVSCDKKL
        +L+ K F E + D K+
Subjt:  NLEVKLFDEVSCDKKL

A0A5A7V1P3 Ty3-gypsy retrotransposon protein1.1e-2055.17Show/hide
Query:  IDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLF-DE
        +  EEVDNS + +QRT +FD IKPS TR SVFQR+SM   EEENQC MSTS +   F+RLS+ST +K   STS FDRLK A+DQ QR M  L+ KLF +E
Subjt:  IDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNLEVKLF-DE

Query:  VSCDKKL-QRISPKFE
         + D K+  R+S + +
Subjt:  VSCDKKL-QRISPKFE

A0A5D3DQU7 Retrotransposon gag protein2.3e-2156.2Show/hide
Query:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD
        E +N   SY    EEVDNS + +QRTSIFDHIKP  TR SVFQR+SMA  EEENQC  ST  R  AF+RLS+ST +K   STS FDRLK+ +DQ QR M 
Subjt:  EKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMD

Query:  NLEVKLFDEVSCDKKLQRISP
        +L+ K F E + D K+    P
Subjt:  NLEVKLFDEVSCDKKLQRISP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTGCTGTTCGTCGAAGTTGCAGGTTCGCGAGCGTTTTCCAGATTTGCGGGTTCGAAAGAGAGATGTGGGTTCGCAAGGGTTTTCCAGATCTGCGGGTTCGAGAG
AGAGATGTGGGTTCATGAGCGTTTTCCAGTGTTCGAGAGAGATATGGGTTTCAGATCTGTGTTTTCCAAATCTGCAGAATTGAAGAACGAGGCTCCGATCATCTTCAAAT
CCCACTGCAGAACTGAAGATCGTTCTACTGCCCATTGTTGCTTCAATGAACTGGCGTTGGAAGAAGATAAAGCTTCTATCGTTGGAGGCCAAGTGATTGTTGTCCTGTCT
TGTTTTAATTCTACCAAGACTACATGTCATGCGCTAACTTGCTCTACTCAGAGATTTCCACATGCGTTACCTGTCAGGGATTTAGCATGCTGCTACCGCATCCGGCTGGC
CAAGCGGGAGTTAGGGGCATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTTTGTACCTGATTCTGACATAGTGACTGTTATGGTGACTGAAACAAGAACTA
TGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAGGATTCTCAAATTGAGCGCCTAAAGAGCCAAATTGAGAACCAACAT
ATCGCCGAATCAAGTCAAACCCAAGAAAAAGAAAACTTTACAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCATCTT
CGATCACATCAAGCCTTCAATTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCAATCGACCTTTAG
CTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTGGATCTTCAACATCTGTTTTTGATCGCCTTAAAGTAGCAGATGATCAACCTCAAAGAAATATGGATAACTTA
GAGGTGAAACTGTTCGATGAAGTAAGCTGTGACAAGAAGCTTCAAAGAATTTCCCCTAAGTTCGAAGTTTCTCACGTTGATGCGCTGCAGTTCCTTCTCTCCAAGTTCGA
AGGTTTCTCTTATGCTTCGCTGCAGTCTCCTTCTCTCCAAGTTCATGCGCTTCGCTACAGTTCTTTCTCCAAGTTTGAAGGTTTCTCCTGCTCTTCGCTGCAGTTCCTTC
TCCAAGTTCGAAGGTTGCGCTTCGCTGCAGTTCCTTCTCTCAAAGTTCAAAGGTTGCGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTTCTCCTGTGCTTCGCTGC
AGTTTCTCTACAAGTCTGAAGGTTCTCCTGCGCTTCGCCGCAGTTTCTTCTTCAATTTTGAAGTTTCTTCTCTCCAAGTTTGAAGGTTCTCCTGCGCTTCGCTGTAGTTA
CTTCTCTTCAAGTTCGAAGGTTCTCCCGCGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTTCAGCGCTTCGCTGCAGTTCCTTCTCTCCAAG
TTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTTCTTCTCTTGAAGTTCGAAGGTTCTCCTACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCAAAGGTTCTCCGCCGCTGTC
GTTTCTTCCTCAAATTTGAAGGTCCTTCATCGTCGTCTTTTCTTCTTCAAGTTTGAAGGTCTCTCATCGTCGTCATTCCTTCTTCAAGTTGAGAATTTCTATCGTTCATT
CATCAAGCTCGAAGCTGCTGGTTTTGCTGCAGCAAACGATTCTGGGGATGAAGTGGATCTTCTGGACCCTGCTGGAGGCGCGGCACGTCAGCCATTTGATTTTGTTGTCT
ACGCTGCTATCTTCGCTACTCTCTCCTTCTTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTGCTGTTCGTCGAAGTTGCAGGTTCGCGAGCGTTTTCCAGATTTGCGGGTTCGAAAGAGAGATGTGGGTTCGCAAGGGTTTTCCAGATCTGCGGGTTCGAGAG
AGAGATGTGGGTTCATGAGCGTTTTCCAGTGTTCGAGAGAGATATGGGTTTCAGATCTGTGTTTTCCAAATCTGCAGAATTGAAGAACGAGGCTCCGATCATCTTCAAAT
CCCACTGCAGAACTGAAGATCGTTCTACTGCCCATTGTTGCTTCAATGAACTGGCGTTGGAAGAAGATAAAGCTTCTATCGTTGGAGGCCAAGTGATTGTTGTCCTGTCT
TGTTTTAATTCTACCAAGACTACATGTCATGCGCTAACTTGCTCTACTCAGAGATTTCCACATGCGTTACCTGTCAGGGATTTAGCATGCTGCTACCGCATCCGGCTGGC
CAAGCGGGAGTTAGGGGCATATACTAATGACAAGTTTATTGTTAAGTATAACCCTTTGTTTGTACCTGATTCTGACATAGTGACTGTTATGGTGACTGAAACAAGAACTA
TGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAGGATTCTCAAATTGAGCGCCTAAAGAGCCAAATTGAGAACCAACAT
ATCGCCGAATCAAGTCAAACCCAAGAAAAAGAAAACTTTACAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCATCTT
CGATCACATCAAGCCTTCAATTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCAATCGACCTTTAG
CTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTGGATCTTCAACATCTGTTTTTGATCGCCTTAAAGTAGCAGATGATCAACCTCAAAGAAATATGGATAACTTA
GAGGTGAAACTGTTCGATGAAGTAAGCTGTGACAAGAAGCTTCAAAGAATTTCCCCTAAGTTCGAAGTTTCTCACGTTGATGCGCTGCAGTTCCTTCTCTCCAAGTTCGA
AGGTTTCTCTTATGCTTCGCTGCAGTCTCCTTCTCTCCAAGTTCATGCGCTTCGCTACAGTTCTTTCTCCAAGTTTGAAGGTTTCTCCTGCTCTTCGCTGCAGTTCCTTC
TCCAAGTTCGAAGGTTGCGCTTCGCTGCAGTTCCTTCTCTCAAAGTTCAAAGGTTGCGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTTCTCCTGTGCTTCGCTGC
AGTTTCTCTACAAGTCTGAAGGTTCTCCTGCGCTTCGCCGCAGTTTCTTCTTCAATTTTGAAGTTTCTTCTCTCCAAGTTTGAAGGTTCTCCTGCGCTTCGCTGTAGTTA
CTTCTCTTCAAGTTCGAAGGTTCTCCCGCGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTTCAGCGCTTCGCTGCAGTTCCTTCTCTCCAAG
TTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTTCTTCTCTTGAAGTTCGAAGGTTCTCCTACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCAAAGGTTCTCCGCCGCTGTC
GTTTCTTCCTCAAATTTGAAGGTCCTTCATCGTCGTCTTTTCTTCTTCAAGTTTGAAGGTCTCTCATCGTCGTCATTCCTTCTTCAAGTTGAGAATTTCTATCGTTCATT
CATCAAGCTCGAAGCTGCTGGTTTTGCTGCAGCAAACGATTCTGGGGATGAAGTGGATCTTCTGGACCCTGCTGGAGGCGCGGCACGTCAGCCATTTGATTTTGTTGTCT
ACGCTGCTATCTTCGCTACTCTCTCCTTCTTCTCTTGA
Protein sequenceShow/hide protein sequence
MELLFVEVAGSRAFSRFAGSKERCGFARVFQICGFEREMWVHERFPVFERDMGFRSVFSKSAELKNEAPIIFKSHCRTEDRSTAHCCFNELALEEDKASIVGGQVIVVLS
CFNSTKTTCHALTCSTQRFPHALPVRDLACCYRIRLAKRELGAYTNDKFIVKYNPLFVPDSDIVTVMVTETRTMEERMVEMQEHINTLMKAIEEKDSQIERLKSQIENQH
IAESSQTQEKENFTTSYCIDVEEVDNSKKSEQRTSIFDHIKPSITRPSVFQRMSMAATEEENQCSMSTSNRPLAFQRLSVSTLRKSGSSTSVFDRLKVADDQPQRNMDNL
EVKLFDEVSCDKKLQRISPKFEVSHVDALQFLLSKFEGFSYASLQSPSLQVHALRYSSFSKFEGFSCSSLQFLLQVRRLRFAAVPSLKVQRLRFAAVPSPSSKVSPVLRC
SFSTSLKVLLRFAAVSSSILKFLLSKFEGSPALRCSYFSSSSKVLPRSSALRCSSFSPNSKVLQRFAAVPSLQVRRFSCASLQFLLLKFEGSPTLRCSSFLKVQRFSAAV
VSSSNLKVLHRRLFFFKFEGLSSSSFLLQVENFYRSFIKLEAAGFAAANDSGDEVDLLDPAGGAARQPFDFVVYAAIFATLSFFS