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Spg035646 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035646
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:241281..244047
RNA-Seq ExpressionSpg035646
SyntenySpg035646
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]9.9e-1767.09Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVTITLTRMS
        L TLSVLRDNDAVVEIELPVPDTLPTSAESF S+S ST        +  DDV WLHA+FR K AGG GGGVT  + + S
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVTITLTRMS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1664.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV
        PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.6e-1453.92Show/hide
Query:  SLVFRAFWGVQ--------VESEAIFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGG
        +L+ + F G++        V ++ IF   PL TLSVLRDNDAV EIELPVPDTL TSAES  S+S S         +  DDV WLHAIFR K+ GG GGG
Subjt:  SLVFRAFWGVQ--------VESEAIFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGG

Query:  VT
        VT
Subjt:  VT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-1453.54Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVT
        PL TLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS+  +                          EG    +  DDV WLHAIFR K AGG GGGVT
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1664.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV
        PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.8e-1453.54Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVT
        PL TLSVLRDNDAVVEIELP+PDTLPTSAES  S+SS+  +                          EG    +  DDV WLHAIFR K AGG GGGVT
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVT

A0A5A7VMG9 Reverse transcriptase1.8e-1664.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV
        PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein4.8e-1767.09Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVTITLTRMS
        L TLSVLRDNDAVVEIELPVPDTLPTSAESF S+S ST        +  DDV WLHA+FR K AGG GGGVT  + + S
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGGVTITLTRMS

A0A5D3BNX1 Zf-CCHC domain-containing protein2.2e-1453.92Show/hide
Query:  SLVFRAFWGVQ--------VESEAIFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGG
        +L+ + F G++        V ++ IF   PL TLSVLRDNDAV EIELPVPDTL TSAES  S+S S         +  DDV WLHAIFR K+ GG GGG
Subjt:  SLVFRAFWGVQ--------VESEAIFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGSGGG

Query:  VT
        VT
Subjt:  VT

A0A5D3DX39 Reverse transcriptase1.8e-1664.63Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV
        PL TLSVLRDNDAVVEIELPVPDTLPTSAES  S+SS+  +        E  W++  + EDDV WLHA+FR K AGG GGGV
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQ--------EGQWVS--LEEDDVRWLHAIFRTKLAGGSGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCTTCGTGTTGCCCTGGGCCCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTCAATAACAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTC
TCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTC
CGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTTCGGGAGGGGGTGTGACAATTACACTTACGAGGATGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCTTCGTGTTGCCCTGGGCCCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTCAATAACAAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTC
TCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTC
CGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTTCGGGAGGGGGTGTGACAATTACACTTACGAGGATGAGTTAA
Protein sequenceShow/hide protein sequence
MLGFVLPWARPPFGKCLHGSITRAQDFRAKQEDLWFSLVFRAFWGVQVESEAIFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSSSSTFQEGQWVSLEEDDV
RWLHAIFRTKLAGGSGGGVTITLTRMS