CuGenDBv2

Gene ID	Spg035651
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Genome location	scaffold3:441593..446573
RNA-Seq Expression	Spg035651
Synteny	Spg035651
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046219.1 uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]

2.9e-23

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        M +    GK   +RL+E+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

TYK18977.1 uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa]

2.9e-23

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        M +    GK   +RL+E+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]

1.2e-24

62.89

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MS TKQ+ K+HV+RL+EIEEQLLYLREVPD +R LE+R++E + K   IDAV+ R+DG+PI+++ MRVE LE +ATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]

4.0e-25

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MSATKQ+ K+HV+RL+EIEEQLLYLREVPDS+R LE+R++E + K   IDAV+ R+DG+PI+++ MRVE  E +ATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]

3.1e-25

58.76

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MS TKQ+GK+H++RL+EIEE+LL+LRE+PD++R++ESRL+EI+TK D ID V+ R+DG+ I+EL++RVE LE++  R  + ERG+SS+ S+A MEER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TY91 Retrotrans_gag domain-containing protein

1.4e-23

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        M +    GK   +RL+E+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

A0A5D3D5Z0 Retrotrans_gag domain-containing protein

1.4e-23

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        M +    GK   +RL+E+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

A0A6J1D906 Reverse transcriptase

5.6e-25

62.89

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MS TKQ+ K+HV+RL+EIEEQLLYLREVPD +R LE+R++E + K   IDAV+ R+DG+PI+++ MRVE LE +ATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

A0A6J1DK29 uncharacterized protein LOC111021829

1.9e-25

63.92

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MSATKQ+ K+HV+RL+EIEEQLLYLREVPDS+R LE+R++E + K   IDAV+ R+DG+PI+++ MRVE  E +ATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

A0A6J1DLQ6 uncharacterized protein LOC111022320

1.5e-25

58.76

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Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER
        MS TKQ+GK+H++RL+EIEE+LL+LRE+PD++R++ESRL+EI+TK D ID V+ R+DG+ I+EL++RVE LE++  R  + ERG+SS+ S+A MEER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGGCTACAAAGCAGATGGGCAAGACCCATGTCGAACGACTCATAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAAGTCCCGGATTCAGTTCGGTTCTTGGAATC
TCGCCTGGAAGAGATTGCAACCAAGACGGACACAATTGATGCGGTATCTGGCCGCCTGGATGGAATGCCCATCAAAGAATTGTTAATGAGGGTTGAGAACCTCGAGGAAG
AAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGACAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGGGCGCCACTTCCCATTCTTGGTATTTTGGTTGAGCCGAGA
CCCAATCTTGTGCTGTCTTTTGTTCACCAAAACACCTTTCTTGCTGGAATTTGGATTTTCTTGATCTCACGCACGTCGTCTTCAACTGACAGCAAGCGTGCAGTTGTCTC
TTGTGGTGAGAGGACGGGGGTAGATTCCGCCTCTTTATCAACCAAAGAAGGATCTCCACTTACATTAGTCGAGACTTTCTTGGTTGTCATGGTAAAAGGCGTCCTGAGAA
TCGAGTGCTCTGATACCAATTTTGATGGAGCCAAAGTAATGAATAACCTCAAGAATATTATTGATCATCAAAATGAAAGGCTATGA

mRNA sequence

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Protein sequence

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MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESRLEEIATKTDTIDAVSGRLDGMPIKELLMRVENLEEEATRPSSFERGDSSTGSVAQMEERAPLPILGILVEPR
PNLVLSFVHQNTFLAGIWIFLISRTSSSTDSKRAVVSCGERTGVDSASLSTKEGSPLTLVETFLVVMVKGVLRIECSDTNFDGAKVMNNLKNIIDHQNERL

Spg035651 (gene) of Sponge gourd (cylindrica) v1 genome