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Spg035666 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035666
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:21564452..21567399
RNA-Seq ExpressionSpg035666
SyntenySpg035666
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.4e-1345.08Show/hide
Query:  MTEILTPRLYGTVCTQVEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEED
        MTEIL+ RLYGTVCTQV+IELP+ DTLPTSAES  S+ +TW+ELY ESV  +   C   +   +G+ L                       G    +  D
Subjt:  MTEILTPRLYGTVCTQVEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGLGGGVT
        DV WLHA+FR K A   G  VT
Subjt:  DVRWLHAIFRTKLAGGLGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-1643.66Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+PRLYGTVCTQ                 VEIELPV DTLPTSAES  S+SSTW+ELY+E V  +        +   G+                 
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP
                     + EDDV WLHA+FR K AGG GGGV P P
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1544.68Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+ RL GTVCTQ                 VEIELPV DTLPTSAE F S+SSTW+ELY+ESV                  + +L     ++P    
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPS
        + S    EG    +  DDV WLHA+FR K AGG  GGVT S
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPS

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-1348.15Show/hide
Query:  VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG
        VEIELP+ DTLPTSAES  S+SSTW+ELY ESV                  + +L     ++P    + S    EG    +  DDV WLHAIFR K AGG
Subjt:  VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  LGGGVTPS
         GGGVTPS
Subjt:  LGGGVTPS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-1643.66Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+PRLYGTVCTQ                 VEIELPV DTLPTSAES  S+SSTW+ELY+E V  +        +   G+                 
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP
                     + EDDV WLHA+FR K AGG GGGV P P
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.4e-1348.15Show/hide
Query:  VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG
        VEIELP+ DTLPTSAES  S+SSTW+ELY ESV                  + +L     ++P    + S    EG    +  DDV WLHAIFR K AGG
Subjt:  VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  LGGGVTPS
         GGGVTPS
Subjt:  LGGGVTPS

A0A5A7V638 Uncharacterized protein2.6e-1345.08Show/hide
Query:  MTEILTPRLYGTVCTQVEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEED
        MTEIL+ RLYGTVCTQV+IELP+ DTLPTSAES  S+ +TW+ELY ESV  +   C   +   +G+ L                       G    +  D
Subjt:  MTEILTPRLYGTVCTQVEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGLGGGVT
        DV WLHA+FR K A   G  VT
Subjt:  DVRWLHAIFRTKLAGGLGGGVT

A0A5A7VMG9 Reverse transcriptase1.5e-1643.66Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+PRLYGTVCTQ                 VEIELPV DTLPTSAES  S+SSTW+ELY+E V  +        +   G+                 
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP
                     + EDDV WLHA+FR K AGG GGGV P P
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP

A0A5D3CCC7 DNA/RNA polymerases superfamily protein9.6e-1644.68Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+ RL GTVCTQ                 VEIELPV DTLPTSAE F S+SSTW+ELY+ESV                  + +L     ++P    
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPS
        + S    EG    +  DDV WLHA+FR K AGG  GGVT S
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPS

A0A5D3DX39 Reverse transcriptase1.5e-1643.66Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF
        MTEIL+PRLYGTVCTQ                 VEIELPV DTLPTSAES  S+SSTW+ELY+E V  +        +   G+                 
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEF

Query:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP
                     + EDDV WLHA+FR K AGG GGGV P P
Subjt:  SESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTPSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGACCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAG
CTCCAGTACGTGGATGGAGTTGTATATTGAGTCCGTCTTGAAGGATTGGAATTCCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAG
GAGACTTATGGGAGCCTTTGGGAGAATTCTCTGAGAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGG
ACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACCCAGCCCCCCACTCGGTCTTGTTGATGCACGATTTGCTTACCGCAAATGTACGGGCCAAGTTATAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGACCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAG
CTCCAGTACGTGGATGGAGTTGTATATTGAGTCCGTCTTGAAGGATTGGAATTCCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAG
GAGACTTATGGGAGCCTTTGGGAGAATTCTCTGAGAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGG
ACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACCCAGCCCCCCACTCGGTCTTGTTGATGCACGATTTGCTTACCGCAAATGTACGGGCCAAGTTATAATATAG
Protein sequenceShow/hide protein sequence
MTEILTPRLYGTVCTQVEIELPVLDTLPTSAESFRSSSSTWMELYIESVLKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGEFSESSTFQEGQRVSLEEDDVRWLHAIFR
TKLAGGLGGGVTPSPPLGLVDARFAYRKCTGQVII