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Spg035668 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035668
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:21866876..21874501
RNA-Seq ExpressionSpg035668
SyntenySpg035668
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]6.5e-1450Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNV  G    +  DD+ WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1758.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  +  E   V +        EDD+ WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.6e-1249.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+       +  DD+ WLHA+FRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGP

Query:  GG
         G
Subjt:  GG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.0e-1153.85Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPGG
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S +   V+         DD+ WLH++FRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1758.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  +  E   V +        EDD+ WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.2e-1450Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNV  G    +  DD+ WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPG

A0A5A7VMG9 Reverse transcriptase6.1e-1858.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  +  E   V +        EDD+ WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.7e-1249.02Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+       +  DD+ WLHA+FRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVQEGQRVSLEEDDIRWLHAIFRAKLAGGP

Query:  GG
         G
Subjt:  GG

A0A5D3CU23 Retrotrans_gag domain-containing protein5.0e-1253.85Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPGG
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S +   V+         DD+ WLH++FRAK A GPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase6.1e-1858.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  +  E   V +        EDD+ WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVQ-EGQRVSL-------EEDDIRWLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATATCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGCATCGATTAGTTTCTCTGAACCTTACACTTACAGTGCTCTAATGTTTTTTATAGAAGAACAACCACTGAAAAGTTTGTCTTCGCGGTTCACCGTTTATCGTCCATCA
ACTGGTCTTGTCGTGCCATCTAGGAAGCATTCGACCTCGATTATCTCTAGTTTGGTGAGGTTTCAGCCTTCCTTGGGTGTTTTTGGGCACCCCCCTGTTTGGGTAATTTG
TAGCCGCTGTACAGCACTTAATCGAGTCTGTTTGGTGCTGATCGGTGCGCAGCATGCATGTTGGCTTTTTACTGCTTTGGAAGTATGGTGTGATGATGATCCAGACCTTG
GTGGCGAGGAGGAGGACCACGAGGAAAATTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATATCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGCATCGATTAGTTTCTCTGAACCTTACACTTACAGTGCTCTAATGTTTTTTATAGAAGAACAACCACTGAAAAGTTTGTCTTCGCGGTTCACCGTTTATCGTCCATCA
ACTGGTCTTGTCGTGCCATCTAGGAAGCATTCGACCTCGATTATCTCTAGTTTGGTGAGGTTTCAGCCTTCCTTGGGTGTTTTTGGGCACCCCCCTGTTTGGGTAATTTG
TAGCCGCTGTACAGCACTTAATCGAGTCTGTTTGGTGCTGATCGGTGCGCAGCATGCATGTTGGCTTTTTACTGCTTTGGAAGTATGGTGTGATGATGATCCAGACCTTG
GTGGCGAGGAGGAGGACCACGAGGAAAATTCCTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVQEGQRVSLEEDDIRWLHAIFRAKLAGGPGGASISFSEPYTYSALMFFIEEQPLKSLSSRFTVYRPS
TGLVVPSRKHSTSIISSLVRFQPSLGVFGHPPVWVICSRCTALNRVCLVLIGAQHACWLFTALEVWCDDDPDLGGEEEDHEENS