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Spg035669 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035669
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:20739941..20744835
RNA-Seq ExpressionSpg035669
SyntenySpg035669
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1057.32Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS
        QVESEA  G VGK+IQ+ TTFMK  PRGNR SLQTR+L KT                 VE+ELPVPDTLPTS ES  ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]2.5e-1138.51Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT---------------------------------VEMELPVPDTLPTSAE----------
        QVESEALF MVGK+IQ+ TT MK  PRGNR SLQT +L KT                                 VE+ELPVPDTLPTSA+          
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT---------------------------------VEMELPVPDTLPTSAE----------

Query:  -------------------SSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGV
                           S   ++S    EG    +  DDV  +HA+FQ K AG  GGGV
Subjt:  -------------------SSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.5e-1153.06Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGVTF-VMKG
        PRGNR SLQT KL KT                 VE+ELPVPDTLPTSAES  ++S ST        +  DDV WLHA+F+ K AGG GGGVTF + KG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGVTF-VMKG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.9e-1475.38Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKTVEMELPVPDTLPTSAESSRTSSSS
        QVESEALFGMV K+IQ+ TTFM   PRGNR S QT KL KTVE+ELPVPDTLPTSAESS ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKTVEMELPVPDTLPTSAESSRTSSSS

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1057.32Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS
        QVESEA  G VGK+IQ+ TTFMK  PRGNR SLQTR+L KT                 VE+ELPVPDTLPTS ES  ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase6.1e-1157.32Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS
        QVESEA  G VGK+IQ+ TTFMK  PRGNR SLQTR+L KT                 VE+ELPVPDTLPTS ES  ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS

A0A5A7TPS6 Retrotrans_gag domain-containing protein1.2e-1138.51Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT---------------------------------VEMELPVPDTLPTSAE----------
        QVESEALF MVGK+IQ+ TT MK  PRGNR SLQT +L KT                                 VE+ELPVPDTLPTSA+          
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT---------------------------------VEMELPVPDTLPTSAE----------

Query:  -------------------SSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGV
                           S   ++S    EG    +  DDV  +HA+FQ K AG  GGGV
Subjt:  -------------------SSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.2e-1153.06Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGVTF-VMKG
        PRGNR SLQT KL KT                 VE+ELPVPDTLPTSAES  ++S ST        +  DDV WLHA+F+ K AGG GGGVTF + KG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSSTFQEGKRVSLEEDDVRWLHAIFQTKLAGGLGGGVTF-VMKG

A0A5D3BET3 Uncharacterized protein9.1e-1575.38Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKTVEMELPVPDTLPTSAESSRTSSSS
        QVESEALFGMV K+IQ+ TTFM   PRGNR S QT KL KTVE+ELPVPDTLPTSAESS ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKTVEMELPVPDTLPTSAESSRTSSSS

A0A5D3BV68 Reverse transcriptase6.1e-1157.32Show/hide
Query:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS
        QVESEA  G VGK+IQ+ TTFMK  PRGNR SLQTR+L KT                 VE+ELPVPDTLPTS ES  ++SS+
Subjt:  QVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKT-----------------VEMELPVPDTLPTSAESSRTSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTAGAGGCGTCATCGACTGGTTTTCACGATTCTCCGGTACCCATAGCGTTTGGGGGCTTAATCGTCAAATTTGAGCATTCCTTTTATCCTGGCCAACAAGGTAA
GGAGGTTGTTTTGGCAAGCTTAAAGGTTGGTTTTGGAAAATATGTTAACAACGTCAAGACGCTAGGGCTAGCGTCTCAACGCCCCTTTGCTGCGCCTTTCAGATTTGGAA
GTCTTCGACAGCGACTCGACGCTGTCCCTTTTACTGCCAGAATTAATTTAGGAAAGTTGCACCGTCGAGACGCTCTAGACGCTGCCTCTCGGATTTTTCCTCTTTTGCAA
CACCAATTTGAATCTTCTTTCATCTTTTCGTATCTTTTTCAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGT
TGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTTCTACAACTTTCATGAAGCATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAG
CTAAGACTGTAGAGATGGAGCTCCCGGTGCCTGATACACTTCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCGACGTTCCAGGAGGGTAAACGGGTATCGTTA
GAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTGTGATGAAAGGTATCCAACTACGAGCATTACA
TTTTTTTTACTGTCCTCTACGCTCATGGGTTGCGTTTGTCTTCGTGCAGTGGCAAACTATGGGTGTCATAAATGCCCCTGGCTACAAACATGCCGCATACCTAGAGGAAC
GTATGTTTATTTATTTATGCGCGGACTCCCCCAAACTTAAAATGGACAATGTCCCCATTGTCCCCCAAACTTACACTGGAGCGCAAGGAATGCAGAAAATCATGGCTGAG
TTGCGGCAAGTCGAAAATGCGAAGGAAATTTCCTTAAGGTCTGAGGAAATGAAGACAAAGGTTAAACCAATTGAAGTAATGCAGTTAAGGAAATTCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTAGAGGCGTCATCGACTGGTTTTCACGATTCTCCGGTACCCATAGCGTTTGGGGGCTTAATCGTCAAATTTGAGCATTCCTTTTATCCTGGCCAACAAGGTAA
GGAGGTTGTTTTGGCAAGCTTAAAGGTTGGTTTTGGAAAATATGTTAACAACGTCAAGACGCTAGGGCTAGCGTCTCAACGCCCCTTTGCTGCGCCTTTCAGATTTGGAA
GTCTTCGACAGCGACTCGACGCTGTCCCTTTTACTGCCAGAATTAATTTAGGAAAGTTGCACCGTCGAGACGCTCTAGACGCTGCCTCTCGGATTTTTCCTCTTTTGCAA
CACCAATTTGAATCTTCTTTCATCTTTTCGTATCTTTTTCAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGT
TGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAATTTTCTACAACTTTCATGAAGCATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAG
CTAAGACTGTAGAGATGGAGCTCCCGGTGCCTGATACACTTCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCGACGTTCCAGGAGGGTAAACGGGTATCGTTA
GAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTGTGATGAAAGGTATCCAACTACGAGCATTACA
TTTTTTTTACTGTCCTCTACGCTCATGGGTTGCGTTTGTCTTCGTGCAGTGGCAAACTATGGGTGTCATAAATGCCCCTGGCTACAAACATGCCGCATACCTAGAGGAAC
GTATGTTTATTTATTTATGCGCGGACTCCCCCAAACTTAAAATGGACAATGTCCCCATTGTCCCCCAAACTTACACTGGAGCGCAAGGAATGCAGAAAATCATGGCTGAG
TTGCGGCAAGTCGAAAATGCGAAGGAAATTTCCTTAAGGTCTGAGGAAATGAAGACAAAGGTTAAACCAATTGAAGTAATGCAGTTAAGGAAATTCAGATAG
Protein sequenceShow/hide protein sequence
MRLEASSTGFHDSPVPIAFGGLIVKFEHSFYPGQQGKEVVLASLKVGFGKYVNNVKTLGLASQRPFAAPFRFGSLRQRLDAVPFTARINLGKLHRRDALDAASRIFPLLQ
HQFESSFIFSYLFQDFRAKQEDLWFPLVFRAFWVVQVESEALFGMVGKIIQFSTTFMKHSPRGNRSSLQTRKLAKTVEMELPVPDTLPTSAESSRTSSSSTFQEGKRVSL
EEDDVRWLHAIFQTKLAGGLGGGVTFVMKGIQLRALHFFYCPLRSWVAFVFVQWQTMGVINAPGYKHAAYLEERMFIYLCADSPKLKMDNVPIVPQTYTGAQGMQKIMAE
LRQVENAKEISLRSEEMKTKVKPIEVMQLRKFR