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Spg035689 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035689
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:20335790..20337659
RNA-Seq ExpressionSpg035689
SyntenySpg035689
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1148.36Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R     G         VESEA  G VGKLIQ+PTTFMK   RGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PVPDTLPTSAESSRSSSSSMFQ
        PVPDTLPTS ES  S+SS+  +
Subjt:  PVPDTLPTSAESSRSSSSSMFQ

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]2.7e-1241.25Show/hide
Query:  VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT---------------------------------VEIELPVPDTLPTSAESSRSS------
        VESEALF MVGKLIQ+PTT MK   RGNR SLQT +L KT                                 VEIELPVPDTLPTSA+ S  +      
Subjt:  VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT---------------------------------VEIELPVPDTLPTSAESSRSS------

Query:  ---SSSMFQEDQRVSLEEDDVR------W--------------LHAIFQTKLAGGPGGGV
           S SM +   R+  +  DVR      W              +HA+FQ K AG PGGGV
Subjt:  ---SSSMFQEDQRVSLEEDDVR------W--------------LHAIFQTKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.3e-1149.49Show/hide
Query:  RGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSMFQ---------------EDQRVS-----------LEEDDVRWLHAIFQTKLAGGPGGGV
        RGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SS+  +                D RV+           +  DD+ WLHA+F  K AG PGGGV
Subjt:  RGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSMFQ---------------EDQRVS-----------LEEDDVRWLHAIFQTKLAGGPGGGV

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.6e-1558.1Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSS
        NR  N    R+N+E+L  +L  R     G         VESEALFGMV KLIQ+PTTFM    RGNR S QT KL KTVEIELPVPDTLPTSAESS S+S
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSS

Query:  SSMFQ
        S+  +
Subjt:  SSMFQ

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1148.36Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R     G         VESEA  G VGKLIQ+PTTFMK   RGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PVPDTLPTSAESSRSSSSSMFQ
        PVPDTLPTS ES  S+SS+  +
Subjt:  PVPDTLPTSAESSRSSSSSMFQ

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase6.6e-1248.36Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R     G         VESEA  G VGKLIQ+PTTFMK   RGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PVPDTLPTSAESSRSSSSSMFQ
        PVPDTLPTS ES  S+SS+  +
Subjt:  PVPDTLPTSAESSRSSSSSMFQ

A0A5A7TPS6 Retrotrans_gag domain-containing protein1.3e-1241.25Show/hide
Query:  VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT---------------------------------VEIELPVPDTLPTSAESSRSS------
        VESEALF MVGKLIQ+PTT MK   RGNR SLQT +L KT                                 VEIELPVPDTLPTSA+ S  +      
Subjt:  VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT---------------------------------VEIELPVPDTLPTSAESSRSS------

Query:  ---SSSMFQEDQRVSLEEDDVR------W--------------LHAIFQTKLAGGPGGGV
           S SM +   R+  +  DVR      W              +HA+FQ K AG PGGGV
Subjt:  ---SSSMFQEDQRVSLEEDDVR------W--------------LHAIFQTKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein1.1e-1149.49Show/hide
Query:  RGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSMFQ---------------EDQRVS-----------LEEDDVRWLHAIFQTKLAGGPGGGV
        RGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SS+  +                D RV+           +  DD+ WLHA+F  K AG PGGGV
Subjt:  RGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSMFQ---------------EDQRVS-----------LEEDDVRWLHAIFQTKLAGGPGGGV

A0A5D3BET3 Uncharacterized protein7.5e-1658.1Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSS
        NR  N    R+N+E+L  +L  R     G         VESEALFGMV KLIQ+PTTFM    RGNR S QT KL KTVEIELPVPDTLPTSAESS S+S
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSS

Query:  SSMFQ
        S+  +
Subjt:  SSMFQ

A0A5D3BV68 Reverse transcriptase6.6e-1248.36Show/hide
Query:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R     G         VESEA  G VGKLIQ+PTTFMK   RGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWFSLVFRAFWAVG---------VESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PVPDTLPTSAESSRSSSSSMFQ
        PVPDTLPTS ES  S+SS+  +
Subjt:  PVPDTLPTSAESSRSSSSSMFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGCTGTAGGAGTTGAATCAGAAGCTCTATTTGGCAT
GGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGACAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCC
CGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTCAATGTTTCAGGAGGATCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTT
CACGCCATCTTCCAGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAAACAGATTACAATGCAACTGGCTACAAACAAATACAGAGTAAATATATCTACAAGCA
CTGTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGCTGTAGGAGTTGAATCAGAAGCTCTATTTGGCAT
GGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGACAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCC
CGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTCAATGTTTCAGGAGGATCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTT
CACGCCATCTTCCAGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAAACAGATTACAATGCAACTGGCTACAAACAAATACAGAGTAAATATATCTACAAGCA
CTGTATATAA
Protein sequenceShow/hide protein sequence
MENRAQNFRANQEDLWFSLVFRAFWAVGVESEALFGMVGKLIQFPTTFMKNSTRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSMFQEDQRVSLEEDDVRWL
HAIFQTKLAGGPGGGVTQTDYNATGYKQIQSKYIYKHCI