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Spg035700 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035700
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:21701629..21704098
RNA-Seq ExpressionSpg035700
SyntenySpg035700
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-2257.6Show/hide
Query:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        PRG+R+S +T ELDKT                 VEIELPVPDTLPTSA+SS S+SS                YF NQVMSGLH V    FNVSVGST IV
Subjt:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGDQM
        RGD+VCWLHAVF AK AGGPGG  M
Subjt:  RGDDVCWLHAVFRAKLAGGPGGDQM

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.0e-2155.2Show/hide
Query:  DLWPRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        D+  RG+RSS ++ ELD T                 VEIELPVPDTLPTSA+SS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DLWPRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-2363.06Show/hide
Query:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
        PRG++ S +T ELDKT                 VEIEL VPDTLPTSA+S  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK 
Subjt:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDQMVV
        AGGPGG   +V
Subjt:  AGGPGGDQMVV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]8.6e-2375.95Show/hide
Query:  DKTVEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDQM
        D  VEIELPVPDTLPTS +SS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP G  M
Subjt:  DKTVEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDQM

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.1e-2158.2Show/hide
Query:  LWPRGSRSSQKTLELDKTV---------------EIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L PRG+R S +T ELDKTV                IELPVPDTLPTSA+SS S+SS                 F NQVMS LH V    FNVSVGSTGIV
Subjt:  LWPRGSRSSQKTLELDKTV---------------EIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGG
        RGDDVCWLHAVFRAK  GGPGG
Subjt:  RGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.2e-2257.6Show/hide
Query:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        PRG+R+S +T ELDKT                 VEIELPVPDTLPTSA+SS S+SS                YF NQVMSGLH V    FNVSVGST IV
Subjt:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGDQM
        RGD+VCWLHAVF AK AGGPGG  M
Subjt:  RGDDVCWLHAVFRAKLAGGPGGDQM

A0A5A7V9N3 Reverse transcriptase3.9e-2155.2Show/hide
Query:  DLWPRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST
        D+  RG+RSS ++ ELD T                 VEIELPVPDTLPTSA+SS S+SS                YF NQVMS LH V    F+V VGST
Subjt:  DLWPRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAKLAGGPGG
        GIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  GIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein6.4e-2463.06Show/hide
Query:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL
        PRG++ S +T ELDKT                 VEIEL VPDTLPTSA+S  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK 
Subjt:  PRGSRSSQKTLELDKT-----------------VEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDQMVV
        AGGPGG   +V
Subjt:  AGGPGGDQMVV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein4.1e-2375.95Show/hide
Query:  DKTVEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDQM
        D  VEIELPVPDTLPTS +SS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP G  M
Subjt:  DKTVEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDQM

A0A5D3CJX3 CCHC-type domain-containing protein1.0e-2158.2Show/hide
Query:  LWPRGSRSSQKTLELDKTV---------------EIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV
        L PRG+R S +T ELDKTV                IELPVPDTLPTSA+SS S+SS                 F NQVMS LH V    FNVSVGSTGIV
Subjt:  LWPRGSRSSQKTLELDKTV---------------EIELPVPDTLPTSAKSSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGG
        RGDDVCWLHAVFRAK  GGPGG
Subjt:  RGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAGTAGGTCGAGTCAAAAAACATTGGAACTAGATAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCA
ACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCAAATGGTGGTG
TTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAGTAGGTCGAGTCAAAAAACATTGGAACTAGATAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCA
ACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATCAAATGGTGGTG
TTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTTAA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGSRSSQKTLELDKTVEIELPVPDTLPTSAKSSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDQMVV
FFVVAEQSRIILDFQRR