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Spg035716 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035716
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold11:21384410..21390272
RNA-Seq ExpressionSpg035716
SyntenySpg035716
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]9.9e-3282.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.4e-3081.32Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+D +NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]1.3e-3155.84Show/hide
Query:  VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGSTPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHV
        +  + F ++++++D  K   Q    + P   +   + +    K  + G + LD      + P K R DD+DSINN LHVP GPIT+ KAKKIQEAFTLHV
Subjt:  VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGSTPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHV

Query:  QKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        QKL NAQRE +NFEPKFLYNVSSASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Subjt:  QKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]2.9e-3182.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC LEDGT +EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.9e-3182.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein4.8e-3282.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein6.9e-3181.32Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+D +NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein6.2e-3255.84Show/hide
Query:  VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGSTPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHV
        +  + F ++++++D  K   Q    + P   +   + +    K  + G + LD      + P K R DD+DSINN LHVP GPIT+ KAKKIQEAFTLHV
Subjt:  VNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILGRQMLDKNGKTGSTPQK-RLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHV

Query:  QKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        QKL NAQRE +NFEPKFLYNVSSASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Subjt:  QKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5D3BWE8 F15O4.131.4e-3182.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC LEDGT +EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5D3DRJ1 F15O4.131.4e-3182.42Show/hide
Query:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL
        ++R DD+DS+NN LHVP GPIT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  QKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGTAGAGAACGGTTTCTTCAAGACCATGATATCAAGAAGAACGCAGAGTTTTTAAATGATAAATCAAAACTTTTGGCAGCTCTAGCGCATACTACCTCTGATGC
AAACTTCCAAAGGATCCTTCAAATGGCGGCATCCTCGACAAGTGGTTCTCCAACCTCGTCTATCCAAGAAGAAGAAGAAGAAGCAGATCCAGAATATGATCTAGACGATC
CATTTCTCGACTCACAACCTATTTTGGTGTTCCAGGCAGTAAGACCTAATGATGAGGTCGTGAGTCCGTTGAATGGAATTCTCGAAAGAAAAATGCTCGATAAGAATGGG
AAAACAGGCTCAACACCACAAAAGAGGCTTGAGAAGGTATATCGATTTCTTGAAATAGAGGCACCAGTTTTTGATTTTCTTCTCGTTCGTGTGAGAGTAGAATGGAATTC
TCGGAAGGAAAATGCTCAAGAAGAATGGGTAAACAGGCTCAACACCACAAAAGAGACTTGGGAAGGTATATATGAGGTGAATAAGGTCATCTTTAATAAGATAGACAAAT
ATATCGATTTCTTGAAACAGATGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCAAGAATGGAATTCTCGGA
AGGCAAATGCTCGACAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGATGATATGGATTCAATCAATAATCCATTGCATGTACCTAACGGACCAATCACAAG
GAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCGCAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTT
CAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGATCCTAGAAGGACCT
CTTGAAGGACTGGAATTCCATAATTCTGTAAAGCGGAAGCGTGATTGGGACCGATTCTGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGA
AGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGATCAAGT
TTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGATCCACAGTTGCACTATTCTCACTATAGAATATTTCTGTGTCCACGGATATCAACCAAGCAGGTCCAACCA
CTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTCTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGTAGAGAACGGTTTCTTCAAGACCATGATATCAAGAAGAACGCAGAGTTTTTAAATGATAAATCAAAACTTTTGGCAGCTCTAGCGCATACTACCTCTGATGC
AAACTTCCAAAGGATCCTTCAAATGGCGGCATCCTCGACAAGTGGTTCTCCAACCTCGTCTATCCAAGAAGAAGAAGAAGAAGCAGATCCAGAATATGATCTAGACGATC
CATTTCTCGACTCACAACCTATTTTGGTGTTCCAGGCAGTAAGACCTAATGATGAGGTCGTGAGTCCGTTGAATGGAATTCTCGAAAGAAAAATGCTCGATAAGAATGGG
AAAACAGGCTCAACACCACAAAAGAGGCTTGAGAAGGTATATCGATTTCTTGAAATAGAGGCACCAGTTTTTGATTTTCTTCTCGTTCGTGTGAGAGTAGAATGGAATTC
TCGGAAGGAAAATGCTCAAGAAGAATGGGTAAACAGGCTCAACACCACAAAAGAGACTTGGGAAGGTATATATGAGGTGAATAAGGTCATCTTTAATAAGATAGACAAAT
ATATCGATTTCTTGAAACAGATGCACCAGTTTTACTTGAATAATTCCCCTGACGCCACCATCGGCGAAGCTTCCACTTCCACTCCCACTATCAAGAATGGAATTCTCGGA
AGGCAAATGCTCGACAAGAATGGGAAAACAGGCTCAACACCACAAAAGAGGCTTGATGATATGGATTCAATCAATAATCCATTGCATGTACCTAACGGACCAATCACAAG
GAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCGCAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTT
CAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGATCCTAGAAGGACCT
CTTGAAGGACTGGAATTCCATAATTCTGTAAAGCGGAAGCGTGATTGGGACCGATTCTGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGA
AGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGATCAAGT
TTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGATCCACAGTTGCACTATTCTCACTATAGAATATTTCTGTGTCCACGGATATCAACCAAGCAGGTCCAACCA
CTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTCTTCAAGCCCTAGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAG
Protein sequenceShow/hide protein sequence
MVRRERFLQDHDIKKNAEFLNDKSKLLAALAHTTSDANFQRILQMAASSTSGSPTSSIQEEEEEADPEYDLDDPFLDSQPILVFQAVRPNDEVVSPLNGILERKMLDKNG
KTGSTPQKRLEKVYRFLEIEAPVFDFLLVRVRVEWNSRKENAQEEWVNRLNTTKETWEGIYEVNKVIFNKIDKYIDFLKQMHQFYLNNSPDATIGEASTSTPTIKNGILG
RQMLDKNGKTGSTPQKRLDDMDSINNPLHVPNGPITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCILEDGTGDEKSVQNLILEGP
LEGLEFHNSVKRKRDWDRFCEHHHYGYTGMTLRLLEEGDLWEPLGEFSEMGPNGPTDQKLQRYETNWPNSLIKFSQHSLTVGHSTKDPQLHYSHYRIFLCPRISTKQVQP
LNRSSSQARRGRRAFLQALESALKGTHIYLPQ