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Spg035821 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035821
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:39266393..39267956
RNA-Seq ExpressionSpg035821
SyntenySpg035821
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]1.4e-0930.52Show/hide
Query:  VGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIP-YDAPSLRIETDALRVSRLLNNMEKDISELSLFIIEVQ
        +G  KVNC+A+WS +R  G VGW++R   G  L AG +          +E LAIR ALS    +    + +E+D+ +   +LN      S+L   + +++
Subjt:  VGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIP-YDAPSLRIETDALRVSRLLNNMEKDISELSLFIIEVQ

Query:  ALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALDI
         L+ S +     +  RS N  AH +A  A     +  W    PDWL      D+
Subjt:  ALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALDI

KAF4360260.1 hypothetical protein F8388_020551 [Cannabis sativa]1.1e-1131.61Show/hide
Query:  PVGTWKVNCNASW-SEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISELSLFIIE
        P G   VNC+A+  S   G+G+ G+I R+W G  L+AG    N+   V+  EA AI EAL+++P    S + I++D   +   + N +  ++ ++  I +
Subjt:  PVGTWKVNCNASW-SEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISELSLFIIE

Query:  VQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALD
        ++  M       + +V R+ N  AHMLA+K   T++++ +   FP WL Q    D
Subjt:  VQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALD

KAF4399153.1 hypothetical protein G4B88_023747 [Cannabis sativa]1.2e-1032.62Show/hide
Query:  VNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEVQALMRS
        VNC+A+ +        G+I R W G  L+AG         VE  EA AI EAL H P+ A  ++ I++D  ++   + + +  +S +S  + ++Q  M S
Subjt:  VNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEVQALMRS

Query:  KTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
             + +V R+ N  AHMLA+K   T+ +  +  SFP WL
Subjt:  KTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.7e-1838Show/hide
Query:  PLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPY--DAPSLRIETDALRVSRLLNNMEKDISELSLFI
        P P+  W +N +ASWS+    G +GWI+R W G  ++AG R V     V+ +EA AI E L ++        L IETD+  V  LLN   +D+++    +
Subjt:  PLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPY--DAPSLRIETDALRVSRLLNNMEKDISELSLFI

Query:  IEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
         E+  L  S  +   A V R  NG AH LAQ+A   R S  W   FP+WL
Subjt:  IEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

XP_031095307.1 uncharacterized protein LOC115999606 [Ipomoea triloba]4.7e-1033.13Show/hide
Query:  AKKLETPLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISE
        + K   P P G  K+N +A+   ++G    GW++R+  G    A    V         E +AIRE LS +   +PS + IETDAL+V + LN+   D S 
Subjt:  AKKLETPLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISE

Query:  LSLFIIEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALDI
          L + +V+ L+RS +   +++VKRS N  AH++A++A      R W    P +L  +  LD+
Subjt:  LSLFIIEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALDI

TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224032.3e-1838Show/hide
Query:  PLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPY--DAPSLRIETDALRVSRLLNNMEKDISELSLFI
        P P+  W +N +ASWS+    G +GWI+R W G  ++AG R V     V+ +EA AI E L ++        L IETD+  V  LLN   +D+++    +
Subjt:  PLPVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPY--DAPSLRIETDALRVSRLLNNMEKDISELSLFI

Query:  IEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
         E+  L  S  +   A V R  NG AH LAQ+A   R S  W   FP+WL
Subjt:  IEVQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

A0A7J6ERF5 Uncharacterized protein5.4e-1231.61Show/hide
Query:  PVGTWKVNCNASW-SEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISELSLFIIE
        P G   VNC+A+  S   G+G+ G+I R+W G  L+AG    N+   V+  EA AI EAL+++P    S + I++D   +   + N +  ++ ++  I +
Subjt:  PVGTWKVNCNASW-SEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPS-LRIETDALRVSRLLNNMEKDISELSLFIIE

Query:  VQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALD
        ++  M       + +V R+ N  AHMLA+K   T++++ +   FP WL Q    D
Subjt:  VQALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWLMQLNALD

A0A7J6HVA4 Uncharacterized protein6.0e-1132.62Show/hide
Query:  VNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEVQALMRS
        VNC+A+ +        G+I R W G  L+AG         VE  EA AI EAL H P+ A  ++ I++D  ++   + + +  +S +S  + ++Q  M S
Subjt:  VNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEVQALMRS

Query:  KTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
             + +V R+ N  AHMLA+K   T+ +  +  SFP WL
Subjt:  KTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

A0A803PLN3 Uncharacterized protein9.3e-1231.97Show/hide
Query:  PVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAP-SLRIETDALRVSRLLNNMEKDISELSLFIIEV
        P G   +NC+A+ +        G+I R W G  L+AG    +    VE  EA AI EAL H P+     L I++D   +   + + +K++S +S  + ++
Subjt:  PVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAP-SLRIETDALRVSRLLNNMEKDISELSLFIIEV

Query:  QALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
        +  M S     + +V R  N  AHMLA+K   T++++ +  SFP WL
Subjt:  QALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

A0A803PR93 Uncharacterized protein2.3e-1031.29Show/hide
Query:  PVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEV
        P G   VNC+A+ +        G+I R + G  L+AG         VE  EA AI EAL + P+ A  +  I++D  ++   + + +  +S +S  + ++
Subjt:  PVGTWKVNCNASWSEKRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDA-PSLRIETDALRVSRLLNNMEKDISELSLFIIEV

Query:  QALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL
        Q  M S     + +V R+ N  AHMLA+K   T+ +  +  SFP WL
Subjt:  QALMRSKTVEEVAYVKRSFNGMAHMLAQKAGDTRSSRCWFSSFPDWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGACAAAAGCTAGCAAAAACAAAGTTGGAAAAACTAACCGATTCTTCACTGCAAAGTAGAACCACCGCCGCCGTCAATGGGAAGGAGAAAACGGATGGGTGGGG
CTTTTTTGTCGAAGAAGAGAAGGACAAAATAGAGGGGTGGGGCTATTTTGTCGAAGAAAAGAATGGGAAGGAAAGTGGACCTAGGGCTTTTTTGGGAAGAAGAAAACGGA
TGGGGCTAAACCAGAGACTACAAAACATCTATTTTGGGAGGGCAAAGAAACTAGAGACTCCTCTACCGGTCGGTACTTGGAAAGTCAACTGCAACGCTTCATGGTCAGAA
AAGCGTGGTCTGGGTAGCGTGGGGTGGATTGTTCGGCACTGGACTGGAGCTCCGTTGATGGCAGGATTCCGAGTGGTGAATAAAGCGTGGAGAGTAGAGTGGGTGGAAGC
TCTTGCAATTCGTGAAGCTTTAAGCCATATTCCATATGATGCCCCATCTCTTCGCATCGAGACTGATGCTCTCCGCGTATCCCGCCTGCTGAACAACATGGAGAAGGATA
TTTCTGAACTATCTCTTTTCATTATTGAAGTTCAAGCCCTAATGAGAAGCAAGACTGTTGAGGAAGTGGCTTATGTCAAAAGATCATTTAATGGGATGGCCCATATGTTA
GCCCAAAAAGCTGGTGATACTAGATCTTCTAGATGTTGGTTTAGTTCTTTCCCTGATTGGTTAATGCAATTAAATGCATTGGATATTGGAAGTGTTAATCCCAATAGTGG
GGGTTCATGTCCCACGGGTGATACCCTTTCGGGAGCATTTGCTCGTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGACAAAAGCTAGCAAAAACAAAGTTGGAAAAACTAACCGATTCTTCACTGCAAAGTAGAACCACCGCCGCCGTCAATGGGAAGGAGAAAACGGATGGGTGGGG
CTTTTTTGTCGAAGAAGAGAAGGACAAAATAGAGGGGTGGGGCTATTTTGTCGAAGAAAAGAATGGGAAGGAAAGTGGACCTAGGGCTTTTTTGGGAAGAAGAAAACGGA
TGGGGCTAAACCAGAGACTACAAAACATCTATTTTGGGAGGGCAAAGAAACTAGAGACTCCTCTACCGGTCGGTACTTGGAAAGTCAACTGCAACGCTTCATGGTCAGAA
AAGCGTGGTCTGGGTAGCGTGGGGTGGATTGTTCGGCACTGGACTGGAGCTCCGTTGATGGCAGGATTCCGAGTGGTGAATAAAGCGTGGAGAGTAGAGTGGGTGGAAGC
TCTTGCAATTCGTGAAGCTTTAAGCCATATTCCATATGATGCCCCATCTCTTCGCATCGAGACTGATGCTCTCCGCGTATCCCGCCTGCTGAACAACATGGAGAAGGATA
TTTCTGAACTATCTCTTTTCATTATTGAAGTTCAAGCCCTAATGAGAAGCAAGACTGTTGAGGAAGTGGCTTATGTCAAAAGATCATTTAATGGGATGGCCCATATGTTA
GCCCAAAAAGCTGGTGATACTAGATCTTCTAGATGTTGGTTTAGTTCTTTCCCTGATTGGTTAATGCAATTAAATGCATTGGATATTGGAAGTGTTAATCCCAATAGTGG
GGGTTCATGTCCCACGGGTGATACCCTTTCGGGAGCATTTGCTCGTTCCTAA
Protein sequenceShow/hide protein sequence
MQRQKLAKTKLEKLTDSSLQSRTTAAVNGKEKTDGWGFFVEEEKDKIEGWGYFVEEKNGKESGPRAFLGRRKRMGLNQRLQNIYFGRAKKLETPLPVGTWKVNCNASWSE
KRGLGSVGWIVRHWTGAPLMAGFRVVNKAWRVEWVEALAIREALSHIPYDAPSLRIETDALRVSRLLNNMEKDISELSLFIIEVQALMRSKTVEEVAYVKRSFNGMAHML
AQKAGDTRSSRCWFSSFPDWLMQLNALDIGSVNPNSGGSCPTGDTLSGAFARS