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Spg035840 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035840
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:40164008..40170554
RNA-Seq ExpressionSpg035840
SyntenySpg035840
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001969 - Aspartic peptidase, active site
IPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047078.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-0668.29Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C INGK+C VIID+GSS+N V+KKL+  LNLK  PHPNP K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

KAA0054760.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.5e-0768.29Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C INGK+C  IIDSGSS+N+V+KKL+  LNLK+ PHPNP K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

KAA0062943.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.6e-0565.85Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C I+GK+C VIIDSGSS+N V++KL+  LNLKI PHP+P K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

KAA0066202.1 Asp_protease_2 domain-containing protein [Cucumis melo var. makuwa]5.0e-0748.05Show/hide
Query:  TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        +RT  + +T +K ++I+   G  E  K +  G+ CT  INGK+C VIIDSGSS+N V+K+L+  LNLK   HPNP K
Subjt:  TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]5.5e-0668.29Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C ING++C VIIDSGSS+N V+KKL+ VLNLK   HPNP K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

TrEMBL top hitse value%identityAlignment
A0A5A7UHK1 DNA/RNA polymerases superfamily protein3.2e-0768.29Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C INGK+C  IIDSGSS+N+V+KKL+  LNLK+ PHPNP K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

A0A5A7V4G7 Retrovirus-related Pol polyprotein from transposon 17.67.8e-0665.85Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C I+GK+C VIIDSGSS+N V++KL+  LNLKI PHP+P K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

A0A5A7VCY1 Asp_protease_2 domain-containing protein2.4e-0748.05Show/hide
Query:  TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        +RT  + +T +K ++I+   G  E  K +  G+ CT  INGK+C VIIDSGSS+N V+K+L+  LNLK   HPNP K
Subjt:  TRTYERRNTGDKQQQIQRSMG--EASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

A0A5D3C3X9 Reverse transcriptase9.2e-0768.29Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C INGK+C VIID+GSS+N V+KKL+  LNLK  PHPNP K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

A0A5D3DGR0 Reverse transcriptase3.9e-0565.85Show/hide
Query:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK
        C I GK+C VIIDSGSS+N VSKKL+  LNLK  PH  P K
Subjt:  CIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAAGAAAGTCTCGACCGCTGTGGGGGGAGACTCAACATCGACGGGAAAAGAGACGGAAACTATCGCCATCCTCTCACCACAAGAAACGACTGCACGCTTGCT
GTCAGTCGAGGATGATGTGCGTGAGATTAAAAAAATTCTTGAAATGCTATGTGAGAAATTGGGCTGCAAGTCGGATCAGCAATTAGCCGATCCGCAAGAACATATAATTA
GGGAAAGAAGACAGCAAGAACAGCAAAGGGAAGGTTGGAAGACCAGGCAATGGCAAGATAGACAAGCCTTTGAGCAGAAAACATTTCAAGAAGCAGTGTTACCACCAAGA
TTTCATCAAGAACAGCATGCGGGCTTGCAAGAATTCAACCATAACCCCCTGTTTAGAAGACAACCTGTATGGTCTGAAGATACATCCATGCATCAAGTTGGTATCAAAGC
GCCTGAATCCAAGGCCTTCATGAAATTGGATTTTCTTTCTCTCATGGAGGCGGAAGCTTCAAACGTGCAGAGAACCTATGATAGACGCTTACAGTTGGTTGAAACATCGG
AGAAAGAAATCAAGAAGAGTGTGAATGACATTCAACCGTCCATTAGACAACTTACACAACAAATGACAACAAAAATTGAGGAGAATGATGAGGCAAAATCGACAAGAACT
TATGAGAGAAGAAATACTGGGGATAAACAACAACAAATTCAAAGATCAATGGGTGAAGCTAGTAAAAATCTTATCCAAGGAAGTTCTTGTACATGCATCATTAATGGAAA
GATTTGCCAAGTTATAATTGATAGTGGGAGTAGCAAAAATATAGTATCCAAGAAACTCATTAATGTCCTCAATCTTAAGATTGGACCACATCCTAATCCTTGTAAGGGAC
AAAGAGAAAAATGGTATGATGAGGAGGTGTTCATAGAGCACGAGGTGTTCTCCATTAGAAAACTACCTTGTGGAAGGAAGTTGGCTGTTGAGGAAAAGGAGGGCCAGAGG
GTGGCTAGATTAGATTTGGACCTTGGGTCAGCAGCTTGGCTAAGTAATCTGCCTTTTGGCCATGGCGAGAAGCATAAATGTGGTAGGCTTCGGGGAAAAGAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAAGAAAGTCTCGACCGCTGTGGGGGGAGACTCAACATCGACGGGAAAAGAGACGGAAACTATCGCCATCCTCTCACCACAAGAAACGACTGCACGCTTGCT
GTCAGTCGAGGATGATGTGCGTGAGATTAAAAAAATTCTTGAAATGCTATGTGAGAAATTGGGCTGCAAGTCGGATCAGCAATTAGCCGATCCGCAAGAACATATAATTA
GGGAAAGAAGACAGCAAGAACAGCAAAGGGAAGGTTGGAAGACCAGGCAATGGCAAGATAGACAAGCCTTTGAGCAGAAAACATTTCAAGAAGCAGTGTTACCACCAAGA
TTTCATCAAGAACAGCATGCGGGCTTGCAAGAATTCAACCATAACCCCCTGTTTAGAAGACAACCTGTATGGTCTGAAGATACATCCATGCATCAAGTTGGTATCAAAGC
GCCTGAATCCAAGGCCTTCATGAAATTGGATTTTCTTTCTCTCATGGAGGCGGAAGCTTCAAACGTGCAGAGAACCTATGATAGACGCTTACAGTTGGTTGAAACATCGG
AGAAAGAAATCAAGAAGAGTGTGAATGACATTCAACCGTCCATTAGACAACTTACACAACAAATGACAACAAAAATTGAGGAGAATGATGAGGCAAAATCGACAAGAACT
TATGAGAGAAGAAATACTGGGGATAAACAACAACAAATTCAAAGATCAATGGGTGAAGCTAGTAAAAATCTTATCCAAGGAAGTTCTTGTACATGCATCATTAATGGAAA
GATTTGCCAAGTTATAATTGATAGTGGGAGTAGCAAAAATATAGTATCCAAGAAACTCATTAATGTCCTCAATCTTAAGATTGGACCACATCCTAATCCTTGTAAGGGAC
AAAGAGAAAAATGGTATGATGAGGAGGTGTTCATAGAGCACGAGGTGTTCTCCATTAGAAAACTACCTTGTGGAAGGAAGTTGGCTGTTGAGGAAAAGGAGGGCCAGAGG
GTGGCTAGATTAGATTTGGACCTTGGGTCAGCAGCTTGGCTAAGTAATCTGCCTTTTGGCCATGGCGAGAAGCATAAATGTGGTAGGCTTCGGGGAAAAGAAGGCTAG
Protein sequenceShow/hide protein sequence
MASKKVSTAVGGDSTSTGKETETIAILSPQETTARLLSVEDDVREIKKILEMLCEKLGCKSDQQLADPQEHIIRERRQQEQQREGWKTRQWQDRQAFEQKTFQEAVLPPR
FHQEQHAGLQEFNHNPLFRRQPVWSEDTSMHQVGIKAPESKAFMKLDFLSLMEAEASNVQRTYDRRLQLVETSEKEIKKSVNDIQPSIRQLTQQMTTKIEENDEAKSTRT
YERRNTGDKQQQIQRSMGEASKNLIQGSSCTCIINGKICQVIIDSGSSKNIVSKKLINVLNLKIGPHPNPCKGQREKWYDEEVFIEHEVFSIRKLPCGRKLAVEEKEGQR
VARLDLDLGSAAWLSNLPFGHGEKHKCGRLRGKEG