; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035845 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035845
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationscaffold5:40007987..40013409
RNA-Seq ExpressionSpg035845
SyntenySpg035845
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030495102.1 uncharacterized protein LOC115710889 [Cannabis sativa]2.9e-1855.75Show/hide
Query:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-
        PGF++ Q  PQQ  Q  PQ +  SSLE++M+DYM +ND +IQSQ ASLR LE QLGQLAN+LK R  G +PSD E+P R+GK+H +A+ LRSGK LE   
Subjt:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-

Query:  -----KEPSKPQE
             KEPS  Q+
Subjt:  -----KEPSKPQE

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]1.3e-1856.64Show/hide
Query:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-
        PGF++ Q  PQQ  Q  PQ +  SSLE++M+DYMA+ND +IQSQ ASLR LE QLGQLAN+LK R  G +PSD E+P R+GK+H +AV LRSGK +E   
Subjt:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-

Query:  -----KEPSKPQE
             KEPS  Q+
Subjt:  -----KEPSKPQE

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]4.5e-1957.52Show/hide
Query:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-
        PGF++ Q  PQQS Q  PQ +  SSLE++M+DYMA+ND +IQSQ ASLR LE QLGQLAN LK R  G +PSD E+P R+GK+H +A+ LRSGK LE   
Subjt:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-

Query:  -----KEPSKPQE
             KEPS  Q+
Subjt:  -----KEPSKPQE

XP_030503898.1 uncharacterized protein LOC115719117 [Cannabis sativa]2.9e-1853.45Show/hide
Query:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-
        PGF++ Q  PQQ  Q  PQ +  SSLE++M+DYMA+ND +IQSQ ASLR LE QLGQLAN+LK R  G +PSD E+P R+GK+H +AV LRSGK +E   
Subjt:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEER-

Query:  --KEPSKPQEVEKSSD
          K   +P  ++K  +
Subjt:  --KEPSKPQEVEKSSD

XP_030507648.1 uncharacterized protein LOC115722545 [Cannabis sativa]5.0e-1857.73Show/hide
Query:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLE
        PGF+      QQ +   PQ +  SSLE++M+DYMA+ND +IQSQ ASLR LE QLGQLAN+LK R  G +PSD E+P R+GK+H +A+ LRSGK LE
Subjt:  PGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLE

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like2.6e-1243.75Show/hide
Query:  AAVVNQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGK
        + V  QP   +    PQQ  Q L Q  + +SLE+++K YMA+ND +IQSQ A+L+ LE Q+GQLA EL+ RL G +PSD E+P   GK+H +A+ LRS K
Subjt:  AAVVNQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGK

Query:  PLEERKEPSKPQEVEKSSDSDVDEKELE
         +E         EVEK   +  D +E++
Subjt:  PLEERKEPSKPQEVEKSSDSDVDEKELE

A0A6J1DW02 uncharacterized protein LOC1110248974.9e-1146.55Show/hide
Query:  QSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSG-------KPLEERKEPSK
        Q  Q  P QN+ S+LE MMK+YMAR D +IQSQ AS+R    QLG LANELK R  G+ P   E P REGK+  +AV LRSG        P  + + PS 
Subjt:  QSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSG-------KPLEERKEPSK

Query:  PQEVEKSSDSDVDEKE
           V+   +    EKE
Subjt:  PQEVEKSSDSDVDEKE

A0A6J1DYG0 uncharacterized protein LOC1110257648.1e-1452.58Show/hide
Query:  QSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEERKEPSKPQEV
        Q  Q  P QN+ S+LE MMK+YMAR D +IQSQ AS+R  E QLGQLANELK R  G+ P   E P REGK+  +AV LRSG   +E   P+   ++
Subjt:  QSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEERKEPSKPQEV

A0A6J1GJ68 uncharacterized protein LOC1114543443.1e-1342.54Show/hide
Query:  NQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEE
        NQ  ++  QV  Q       Q  S +S+E+++K+YMA+NDV+IQSQQASL+ LE Q+GQLA EL+ R  G +P+D E P REGK+  QA+ LRSGK +  
Subjt:  NQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEE

Query:  RKEPSKPQ---EVEKSSDSDV--DEKELESTHIK
          E +  Q     ++++D+    DE  ++  H K
Subjt:  RKEPSKPQ---EVEKSSDSDV--DEKELESTHIK

A0A6J1H7K8 uncharacterized protein LOC1114611672.5e-1546.03Show/hide
Query:  NQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEE
        NQ  +   Q   Q       Q   E+SLE+++K+YMA+NDV+IQSQQASLR LE Q+GQLANEL+ R  G +PSD E P REG +  QA+ LRSGK +  
Subjt:  NQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASLRVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEE

Query:  RKEPSKPQEVEKSSD-SDVDEKELES
        R+E  K     +S + +D  +++ E+
Subjt:  RKEPSKPQEVEKSSD-SDVDEKELES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAATTGACGGCAGAATGGAGATCTAAGAAGACCATTTGCGATTCCATTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGGCCGATATTGCAACATTAGCTAA
CACTCTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTGGTGGAGCCTGCTGCAGTTGTAAACCAACCAGGATTTGCTAAAGCGCAGGTATTGCCCCAGC
AAAGTAAGCAGGTTTTGCCCCAGCAAAATTCGGAGAGTTCTCTTGAGGCAATGATGAAGGATTATATGGCTCGTAATGATGTCATAATCCAAAGTCAGCAGGCTTCATTG
AGAGTCCTAGAGTTTCAACTAGGCCAGCTAGCTAATGAGCTGAAGGCACGACTTCACGGGAACATTCCTTCAGATATTGAACACCCTATAAGGGAAGGTAAGAAGCATGT
GCAGGCAGTAATTTTAAGAAGTGGTAAGCCACTAGAAGAGAGGAAAGAGCCTAGTAAACCCCAGGAAGTAGAAAAAAGTAGTGATAGTGATGTTGACGAAAAAGAATTGG
AGTCTACTCATATTAAGGCAGTGAAAACACATTGGTATGATGACTTTTCCAATTACCTTGATTTTGGAAATTTGCCTCCTGGTTTATCAAAAGAACAAATGAAAGAATTT
TTCCATGAGGTGAAGTTTTATTTATCGAATGATGCATCTATGGTTAGACAATGTGTTGATGATGGCTTTGCTGGCAGATTTAGGGAGCGCAGTTGGAAACAGTTGTGCGC
AAAGTCGGAGCCCACTGTTGATCAACTAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTCATGGAGTTGCTCTCGACTGGAGCCCTG
GAGTGATTAATTCTCTATTTTATTTACAAGACTTCCCCCATGCTGTTTTCAACGAAATATTAGTTGTTTCCTCAAACGAGCAACTGAATGCCCAGTGGAGGTTGTCTAGG
ACAAAGGTAAGAACATTCCAGTCAACATACCTGAAGAGTGAGGCTACTACTTGGCTCGACTTTATCAAGAAGAGATTATTGCTTACAGCATACGACTTCACTGTCCCCCG
TGATCGAGTGCACTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAATTGACGGCAGAATGGAGATCTAAGAAGACCATTTGCGATTCCATTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGGCCGATATTGCAACATTAGCTAA
CACTCTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTGGTGGAGCCTGCTGCAGTTGTAAACCAACCAGGATTTGCTAAAGCGCAGGTATTGCCCCAGC
AAAGTAAGCAGGTTTTGCCCCAGCAAAATTCGGAGAGTTCTCTTGAGGCAATGATGAAGGATTATATGGCTCGTAATGATGTCATAATCCAAAGTCAGCAGGCTTCATTG
AGAGTCCTAGAGTTTCAACTAGGCCAGCTAGCTAATGAGCTGAAGGCACGACTTCACGGGAACATTCCTTCAGATATTGAACACCCTATAAGGGAAGGTAAGAAGCATGT
GCAGGCAGTAATTTTAAGAAGTGGTAAGCCACTAGAAGAGAGGAAAGAGCCTAGTAAACCCCAGGAAGTAGAAAAAAGTAGTGATAGTGATGTTGACGAAAAAGAATTGG
AGTCTACTCATATTAAGGCAGTGAAAACACATTGGTATGATGACTTTTCCAATTACCTTGATTTTGGAAATTTGCCTCCTGGTTTATCAAAAGAACAAATGAAAGAATTT
TTCCATGAGGTGAAGTTTTATTTATCGAATGATGCATCTATGGTTAGACAATGTGTTGATGATGGCTTTGCTGGCAGATTTAGGGAGCGCAGTTGGAAACAGTTGTGCGC
AAAGTCGGAGCCCACTGTTGATCAACTAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTCATGGAGTTGCTCTCGACTGGAGCCCTG
GAGTGATTAATTCTCTATTTTATTTACAAGACTTCCCCCATGCTGTTTTCAACGAAATATTAGTTGTTTCCTCAAACGAGCAACTGAATGCCCAGTGGAGGTTGTCTAGG
ACAAAGGTAAGAACATTCCAGTCAACATACCTGAAGAGTGAGGCTACTACTTGGCTCGACTTTATCAAGAAGAGATTATTGCTTACAGCATACGACTTCACTGTCCCCCG
TGATCGAGTGCACTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGA
Protein sequenceShow/hide protein sequence
MVELTAEWRSKKTICDSIQEDEVLPCSWWADIATLANTLKNITVVSNVQQPPVVEPAAVVNQPGFAKAQVLPQQSKQVLPQQNSESSLEAMMKDYMARNDVIIQSQQASL
RVLEFQLGQLANELKARLHGNIPSDIEHPIREGKKHVQAVILRSGKPLEERKEPSKPQEVEKSSDSDVDEKELESTHIKAVKTHWYDDFSNYLDFGNLPPGLSKEQMKEF
FHEVKFYLSNDASMVRQCVDDGFAGRFRERSWKQLCAKSEPTVDQLEREFYANIDENEGFLVIVHGVALDWSPGVINSLFYLQDFPHAVFNEILVVSSNEQLNAQWRLSR
TKVRTFQSTYLKSEATTWLDFIKKRLLLTAYDFTVPRDRVHLKVQSPKEFQ