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Spg035919 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035919
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:39537216..39537710
RNA-Seq ExpressionSpg035919
SyntenySpg035919
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]5.0e-0744.44Show/hide
Query:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        RW   P N WK+N DASWS++R+ GGIGWIL D  G  +  G  +I     +  LE+  I+ G
Subjt:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.5e-0844.59Show/hide
Query:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        P R    +++ARWKP   N+WK+N DA+W       GIGWILRD  G  I  G + I A  ++  LE+ AI EG
Subjt:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]3.5e-0844.59Show/hide
Query:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        P R    +++ARWKP   N+WK+N DA+W       GIGWILRD  G  I  G + I A  ++  LE+ AI EG
Subjt:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.5e-0842.31Show/hide
Query:  ELSVPPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        E S+    K+ +++ +W+P P + W +N DASWSD    GGIGWI+R   G  +  G + + A  +VK+LE  AILEG
Subjt:  ELSVPPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.8e-0746.88Show/hide
Query:  ARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        ARWKP   N+WK+N DA+W      GGIGWILRD  G  I    + I    ++  LE+ AI EG
Subjt:  ARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132162.4e-0744.44Show/hide
Query:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        RW   P N WK+N DASWS++R+ GGIGWIL D  G  +  G  +I     +  LE+  I+ G
Subjt:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.7e-0844.59Show/hide
Query:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        P R    +++ARWKP   N+WK+N DA+W       GIGWILRD  G  I  G + I A  ++  LE+ AI EG
Subjt:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-0842.31Show/hide
Query:  ELSVPPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        E S+    K+ +++ +W+P P + W +N DASWSD    GGIGWI+R   G  +  G + + A  +VK+LE  AILEG
Subjt:  ELSVPPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.7e-0844.59Show/hide
Query:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        P R    +++ARWKP   N+WK+N DA+W       GIGWILRD  G  I  G + I A  ++  LE+ AI EG
Subjt:  PPRLKSQSSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
A0A6J1DSV1 uncharacterized protein LOC1110236081.8e-0746.88Show/hide
Query:  ARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
        ARWKP   N+WK+N DA+W      GGIGWILRD  G  I    + I    ++  LE+ AI EG
Subjt:  ARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0435Show/hide
Query:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAI
        +WK  P    K N DA+W  +    GIGWILR+  G  + MG + +  + +V   E++A+
Subjt:  RWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAI
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-0429.23Show/hide
Query:  SSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAIL
        S   +W P   +  K N DAS  ++    G+GWILR+S G+ I  G+ +     + +  E   ++
Subjt:  SSQARWKPLPENTWKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGGCTAATCCCCCTAACAAATGGTTTATTTTTGCTGAACAGGAGAAGTTGGAGCCCAACGGATTATTGGTCATGAATCTTAGAGAACCTAGGTATAGAAGAGA
TGGAAAAGGTGATTGTAATTCTATGGAGTACATAGAATCACAAAAATTTCGTCAACCAAAACAACCGGATCTCAACATTCTAATTAGATCGATCGAATCTAATTCTCAAG
ATGTAGCTGACATACCGAAAAATTACCTGAAAGTTCCAGAGTTGTCGGTCCCCCCGAGATTGAAGAGCCAATCGAGTCAAGCTAGATGGAAGCCCCTGCCGGAAAATACT
TGGAAGATGAATGTAGATGCCTCTTGGAGCGATCAACGAAAATGCGGTGGCATTGGGTGGATTCTGCGTGATTCCATAGGATCTCCAATCTGCATGGGAATTCAGAGGAT
CAACGCAAGCTGGTCCGTTAAAATGCTAGAGATGAAAGCTATTCTTGAGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGGCTAATCCCCCTAACAAATGGTTTATTTTTGCTGAACAGGAGAAGTTGGAGCCCAACGGATTATTGGTCATGAATCTTAGAGAACCTAGGTATAGAAGAGA
TGGAAAAGGTGATTGTAATTCTATGGAGTACATAGAATCACAAAAATTTCGTCAACCAAAACAACCGGATCTCAACATTCTAATTAGATCGATCGAATCTAATTCTCAAG
ATGTAGCTGACATACCGAAAAATTACCTGAAAGTTCCAGAGTTGTCGGTCCCCCCGAGATTGAAGAGCCAATCGAGTCAAGCTAGATGGAAGCCCCTGCCGGAAAATACT
TGGAAGATGAATGTAGATGCCTCTTGGAGCGATCAACGAAAATGCGGTGGCATTGGGTGGATTCTGCGTGATTCCATAGGATCTCCAATCTGCATGGGAATTCAGAGGAT
CAACGCAAGCTGGTCCGTTAAAATGCTAGAGATGAAAGCTATTCTTGAGGGCTGA
Protein sequenceShow/hide protein sequence
MEKANPPNKWFIFAEQEKLEPNGLLVMNLREPRYRRDGKGDCNSMEYIESQKFRQPKQPDLNILIRSIESNSQDVADIPKNYLKVPELSVPPRLKSQSSQARWKPLPENT
WKMNVDASWSDQRKCGGIGWILRDSIGSPICMGIQRINASWSVKMLEMKAILEG