; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035974 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035974
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:21609704..21616652
RNA-Seq ExpressionSpg035974
SyntenySpg035974
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]4.7e-0979.55Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEG
        MSGLH V    FNVSVGST I+RGDDVCWLHAVFRAK AGGP G
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEG
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.7e-0976.09Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MS LH V    FNVSVGSTGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.6e-0973.91Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MSGLH V    FN+SV STGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]8.0e-0986.11Show/hide
Query:  RFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        RFNVSVGS GIIRGDDVCWLHAVFRAK+AG P G V
Subjt:  RFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.7e-0976.09Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MS LH V    FNVSVGSTGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein2.3e-0976.09Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MS LH V    FNVSVGSTGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.7e-0973.91Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MSGLH V    FN+SV STGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
A0A5D3C0X3 Retrotrans_gag domain-containing protein3.9e-0986.11Show/hide
Query:  RFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        RFNVSVGS GIIRGDDVCWLHAVFRAK+AG P G V
Subjt:  RFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
A0A5D3CJX3 CCHC-type domain-containing protein2.3e-0976.09Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
        MS LH V    FNVSVGSTGI+RGDDVCWLHAVFRAK  GGP G V
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAV
A0A5D3DIE3 Retrotrans_gag domain-containing protein2.3e-0979.55Show/hide
Query:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEG
        MSGLH V    FNVSVGST I+RGDDVCWLHAVFRAK AGGP G
Subjt:  MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTTGGCTTCACGCTGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGAAGGGGCGGTCGATTTTGCTGCAGCACACGATTTTGCTGGGGGTTCGCTGGATCTTCAGGACCTTGCGGGAGACTCGGCACATCAGCCATCGA
ATTCTGGTTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTTGGCTTCACGCTGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGAAGGGGCGGTCGATTTTGCTGCAGCACACGATTTTGCTGGGGGTTCGCTGGATCTTCAGGACCTTGCGGGAGACTCGGCACATCAGCCATCGA
ATTCTGGTTTCTACGCTGCTCTCTCCTTCTTCTCCTGA
Protein sequenceShow/hide protein sequence
MSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPEGAVDFAAAHDFAGGSLDLQDLAGDSAHQPSNSGFYAALSFFS