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Spg035989 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035989
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:26259992..26261010
RNA-Seq ExpressionSpg035989
SyntenySpg035989
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.6e-1076.19Show/hide
Query:  VHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        V+TGY+ LLTL+VL DNDA+VSAGR PLRQR+WECWA P+TS
Subjt:  VHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1164.62Show/hide
Query:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GP+TS
Subjt:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.5e-0859.09Show/hide
Query:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        + RGNR SLQT EL KT              L TLSVL +NDA VSAGR PLRQRRWEC  GP+TS
Subjt:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1164.62Show/hide
Query:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GP+TS
Subjt:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]1.5e-0866.1Show/hide
Query:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWEC
        RPRGNR SLQT EL KT              L TLSVLCDND VVSAGRA LRQRRWEC
Subjt:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWEC

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.7e-1076.19Show/hide
Query:  VHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        V+TGY+ LLTL+VL DNDA+VSAGR PLRQR+WECWA P+TS
Subjt:  VHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

A0A5A7T7M6 Reverse transcriptase1.2e-1164.62Show/hide
Query:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GP+TS
Subjt:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

A0A5A7TDY3 Uncharacterized protein7.3e-0959.09Show/hide
Query:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        + RGNR SLQT EL KT              L TLSVL +NDA VSAGR PLRQRRWEC  GP+TS
Subjt:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

A0A5D3BTP3 Reverse transcriptase1.2e-1164.62Show/hide
Query:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC  GP+TS
Subjt:  PRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWECWAGPSTS

A0A5D3DV36 Retrotrans_gag domain-containing protein7.3e-0966.1Show/hide
Query:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWEC
        RPRGNR SLQT EL KT              L TLSVLCDND VVSAGRA LRQRRWEC
Subjt:  RPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQRRWEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGAAAAACAGAGCACAGGATTTTCCAGCAAAGCAGGAGGATCTCTGGTTTAATGTCAGGAGAATGATAAAGGGTAGCAGAGAAGATCAAATCTGTGT
TGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCTCGTTTTCTTTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTC
CCAAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAA
AGACGATGGGAGTGCTGGGCGGGCCCCAGTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGAAAAACAGAGCACAGGATTTTCCAGCAAAGCAGGAGGATCTCTGGTTTAATGTCAGGAGAATGATAAAGGGTAGCAGAGAAGATCAAATCTGTGT
TGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCTCGTTTTCTTTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTC
CCAAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAA
AGACGATGGGAGTGCTGGGCGGGCCCCAGTACATCGTAG
Protein sequenceShow/hide protein sequence
MVFGMKNRAQDFPAKQEDLWFNVRRMIKGSREDQICVVCVRGVSGQIGWESRFLFFRPRGNRSSLQTRELAKTPKAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRAPLRQ
RRWECWAGPSTS