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Spg035991 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035991
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:26264840..26267790
RNA-Seq ExpressionSpg035991
SyntenySpg035991
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.3e-4766.67Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQ SLSVA+YERKYT+LSRYA++IVASESDRC RFERGLRFEIRTP                      SI+EEK A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P VN+SG QDFKRRSG +  RQMS G+AYQR+S+RA +Q A+SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-0682.86Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI
        VEIELPVPD LPTSAESSRS+SSTW+ELY E VH+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.3e-4766.67Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQ SLSVA+YERKYT+LSRYA++IVASESDRC RFERGLRFEIRTP                      SI+EEK A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P VN+SG QDFKRRSG +  RQMS G+AYQR+S+RA +Q A+SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

KAA0059506.1 uncharacterized protein E6C27_scaffold518G00110 [Cucumis melo var. makuwa]3.1e-4564.88Show/hide
Query:  ATYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTA
        +TY EAKRDEFL LKQGSLSVAEYERKYT+LSRY DVIVASESDRCRRFERGLRFEIRTP                      SI EEK A+E SRG  TA
Subjt:  ATYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTA

Query:  SGFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVAT
        SGFRGREQRRF P +NIS RQDFK RSG Q SR +S G+ +QR+SQR P+Q   S  R + GQES+A+
Subjt:  SGFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVAT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-0682.86Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI
        VEIELPVPD LPTSAESSRS+SSTW+ELY E VH+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-4666.08Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQGSL VAEYERKYT+LSRY ++IVASESDRCRRFERGLRFEI TP                      SI+EEK  +E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQ RF P VN+SG QDFKRRSG +  RQMS G+AYQR+SQRA +QS +SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

XP_016903324.1 PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo]1.8e-4565.5Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRT----------------------PSIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVASESDRCR FERGLRFEIRT                       SI++E  A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRT----------------------PSIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P V++SG QDFKRRSG +  RQMS G+AYQR+ QRA +QS +SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

TrEMBL top hitse value%identityAlignment
A0A1S4E521 uncharacterized protein LOC1035028048.7e-4665.5Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRT----------------------PSIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVASESDRCR FERGLRFEIRT                       SI++E  A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRT----------------------PSIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P V++SG QDFKRRSG +  RQMS G+AYQR+ QRA +QS +SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

A0A5A7T7M6 Reverse transcriptase3.0e-0682.86Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI
        VEIELPVPD LPTSAESSRS+SSTW+ELY E VH+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI

A0A5A7T7M6 Reverse transcriptase3.9e-4666.08Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQGSL VAEYERKYT+LSRY ++IVASESDRCRRFERGLRFEI TP                      SI+EEK  +E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQ RF P VN+SG QDFKRRSG +  RQMS G+AYQR+SQRA +QS +SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

A0A5A7UZA0 CCHC-type domain-containing protein1.5e-4564.88Show/hide
Query:  ATYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTA
        +TY EAKRDEFL LKQGSLSVAEYERKYT+LSRY DVIVASESDRCRRFERGLRFEIRTP                      SI EEK A+E SRG  TA
Subjt:  ATYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTA

Query:  SGFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVAT
        SGFRGREQRRF P +NIS RQDFK RSG Q SR +S G+ +QR+SQR P+Q   S  R + GQES+A+
Subjt:  SGFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVAT

A0A5D3BTP3 Reverse transcriptase3.5e-4766.67Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQ SLSVA+YERKYT+LSRYA++IVASESDRC RFERGLRFEIRTP                      SI+EEK A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P VN+SG QDFKRRSG +  RQMS G+AYQR+S+RA +Q A+SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

A0A5D3BTP3 Reverse transcriptase3.0e-0682.86Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI
        VEIELPVPD LPTSAESSRS+SSTW+ELY E VH+
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHI

A0A5D3BTP3 Reverse transcriptase3.5e-4766.67Show/hide
Query:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS
        TY EAKRDEFLELKQ SLSVA+YERKYT+LSRYA++IVASESDRC RFERGLRFEIRTP                      SI+EEK A+E SRG  T S
Subjt:  TYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTP----------------------SIIEEKVALEPSRGAPTAS

Query:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR
        G RGREQRRF P VN+SG QDFKRRSG +  RQMS G+AYQR+S+RA +Q A+SVAR RTGQESVA++S R
Subjt:  GFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVATDSSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTATATGAACACCTTCATAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAG
TTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTTTGTCCATATTGGATTCCGCTGTGTTGTGTTTCATTTAGAATATTTTATATCTAAGATTAATATGT
TTGCCACATATAGTGAGGCAAAGAGAGATGAGTTTCTGGAGCTGAAACAAGGGTCACTTTCAGTAGCCGAGTACGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGAT
GTGATTGTGGCATCTGAGAGTGACAGGTGTCGCAGGTTTGAGAGAGGGTTGCGTTTTGAGATACGTACCCCGAGTATTATAGAGGAAAAGGTGGCATTGGAGCCTAGTCG
TGGAGCTCCAACAGCCAGTGGTTTCCGGGGTCGTGAGCAGCGGAGGTTCGCACCTAGAGTGAATATCTCAGGCCGTCAAGACTTCAAGCGCCGATCTGGTTGCCAAATGT
CGAGGCAGATGAGTTTGGGTACTGCTTATCAGAGGCGGAGTCAGAGAGCCCCCAATCAGTCTGCGAGTTCAGTAGCAAGACCGCGGACGGGTCAGGAGTCAGTTGCTACG
GATTCCTCCCGGAACTCTGGATCTTTTGGGATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTATATGAACACCTTCATAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAG
TTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTTTGTCCATATTGGATTCCGCTGTGTTGTGTTTCATTTAGAATATTTTATATCTAAGATTAATATGT
TTGCCACATATAGTGAGGCAAAGAGAGATGAGTTTCTGGAGCTGAAACAAGGGTCACTTTCAGTAGCCGAGTACGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGAT
GTGATTGTGGCATCTGAGAGTGACAGGTGTCGCAGGTTTGAGAGAGGGTTGCGTTTTGAGATACGTACCCCGAGTATTATAGAGGAAAAGGTGGCATTGGAGCCTAGTCG
TGGAGCTCCAACAGCCAGTGGTTTCCGGGGTCGTGAGCAGCGGAGGTTCGCACCTAGAGTGAATATCTCAGGCCGTCAAGACTTCAAGCGCCGATCTGGTTGCCAAATGT
CGAGGCAGATGAGTTTGGGTACTGCTTATCAGAGGCGGAGTCAGAGAGCCCCCAATCAGTCTGCGAGTTCAGTAGCAAGACCGCGGACGGGTCAGGAGTCAGTTGCTACG
GATTCCTCCCGGAACTCTGGATCTTTTGGGATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAA
Protein sequenceShow/hide protein sequence
MCYMNTFIVNVGCTGRALHNVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHIGFRCVVFHLEYFISKINMFATYSEAKRDEFLELKQGSLSVAEYERKYTKLSRYAD
VIVASESDRCRRFERGLRFEIRTPSIIEEKVALEPSRGAPTASGFRGREQRRFAPRVNISGRQDFKRRSGCQMSRQMSLGTAYQRRSQRAPNQSASSVARPRTGQESVAT
DSSRNSGSFGMCFNPNEVRPIKH