CuGenDBv2

Gene ID	Spg035997
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosome production factor 1-like
Genome location	scaffold5:25297504..25299431
RNA-Seq Expression	Spg035997
Synteny	Spg035997
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]

2.1e-16

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

XP_008443158.1 PREDICTED: ribosome production factor 1 isoform X2 [Cucumis melo]

2.1e-16

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

7.4e-17

82.76

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

XP_022156150.1 ribosome production factor 1-like [Momordica charantia]

7.4e-17

82.76

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]

9.6e-17

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL +GRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B7C9 ribosome production factor 1 isoform X2

1.0e-16

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

A0A1S3B854 ribosome production factor 1 isoform X1

1.0e-16

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

A0A5A7UHC7 Ribosome production factor 1 isoform X1

1.0e-16

81.03

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPT H+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

A0A6J1DPH5 ribosome production factor 1-like

3.6e-17

82.76

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

A0A6J1DT48 ribosome production factor 1-like

3.6e-17

82.76

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Query:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL
        +D LLIIGL EG T HFKISNVVLRKDIKNHGNPTSH+PELVLTNFT  LGL VGRL+
Subjt:  VDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLL

SwissProt top hits

e value

%identity

Alignment

Q5RJS9 Ribosome production factor 1

2.5e-07

38.55

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Query:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYEDCILYVGF
        L++  L  G T HFK+S+V LRK+IK  G +PT H PE++L NFT  LG  +GR+ +      P+F+   + ++ +   Y+ F
Subjt:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYEDCILYVGF

Q6IQU6 Ribosome production factor 1

2.9e-08

39.47

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Query:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYED
        +++  L +G T HFK+S+V LRK++K  G NPT H PE++L NFT  LG  +GRL +      P+F+   + ++ +
Subjt:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYED

Q7TND5 Ribosome production factor 1

2.5e-07

38.55

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Query:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYEDCILYVGF
        L++  L  G T HFK+S+V LRK+IK  G +PT H PE++L NFT  LG  +GR+ +      P+F+   + ++ +   Y+ F
Subjt:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLSV-----PKFLYLNILSYEDCILYVGF

Q8AVP1 Ribosome production factor 1

1.0e-08

52.63

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Query:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLS
        L++  L +G T HFKISNV LRK++K  G  PT HKPE++L NFT  LG  +GR+ +
Subjt:  LLIIGLLEGLTVHFKISNVVLRKDIKNHG-NPTSHKPELVLTNFTISLGLHVGRLLS

Q9VKB4 Probable ribosome production factor 1

1.0e-08

57.14

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Query:  LLIIGLLEGLTVHFKISNVVLRKDIK-NHGNPTSHKPELVLTNFTISLGLHVGRLL
        LL+I L  G T HFK+SNV L  DIK +H   T H+PE++L NFT  LGL VGR+L
Subjt:  LLIIGLLEGLTVHFKISNVVLRKDIK-NHGNPTSHKPELVLTNFTISLGLHVGRLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

7.6e-04

33.72

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Query:  DDLLIIGLLEGLTVHFKISNVVLRKDI---KNHGNPTSHKPELVLTNFTISLGLHVGRLLS----VPKFLYLNILSYEDCILYVGF
        D L+I  L  G T +F + NVV R DI   K+ G      P L+  NFT  +G  VG +L      PK     I+++ +   Y+ F
Subjt:  DDLLIIGLLEGLTVHFKISNVVLRKDI---KNHGNPTSHKPELVLTNFTISLGLHVGRLLS----VPKFLYLNILSYEDCILYVGF

AT4G01560.1 Ribosomal RNA processing Brix domain protein

1.6e-17

76.36

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Query:  DDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGR
        D LLIIGL  G T HFK+SN+VLRKDIKNHGNPTSH+PELVL NFT  LG  VGR
Subjt:  DDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGR

Sequences

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CDS sequence

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ATGTCTATGAGTTATGGTAGCCAAGGATTTGAGTATAGGGTTGGTGGGGGTGGGGGTGATTATGGTAGTCATAGTTTTGTTATGATTTGTGTTGATGACCTTCTAATTAT
TGGCTTACTTGAGGGACTTACTGTCCACTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACTAGCCACAAGCCAGAGCTTGTATTGA
CTAACTTCACAATAAGCCTTGGTCTTCATGTTGGAAGGTTGCTTTCTGTACCTAAATTTCTTTATCTGAATATACTGTCTTATGAAGACTGCATTTTATATGTAGGGTTC
TTACTCTTTCCTGATTCTTACGCTTCTCTGATTTATGATATCTCTACTCTCAAGTCTCAAGTTTTTTCTTAA

mRNA sequence

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Protein sequence

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MSMSYGSQGFEYRVGGGGGDYGSHSFVMICVDDLLIIGLLEGLTVHFKISNVVLRKDIKNHGNPTSHKPELVLTNFTISLGLHVGRLLSVPKFLYLNILSYEDCILYVGF
LLFPDSYASLIYDISTLKSQVFS

Spg035997 (gene) of Sponge gourd (cylindrica) v1 genome