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Spg036119 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036119
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold5:47322953..47324595
RNA-Seq ExpressionSpg036119
SyntenySpg036119
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591873.1 hypothetical protein SDJN03_14219, partial [Cucurbita argyrosperma subsp. sororia]7.1e-0544.62Show/hide
Query:  VVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLND
        VVH S GS+IC   K +KK W I  +EA  ILE L+ I+D +    IP+ +ESD+    I +LN+
Subjt:  VVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLND

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]9.0e-0834.52Show/hide
Query:  WNEKEGLGGLGWVVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLNDEEDDLFD
        W+E+ G GG+ WV+HDS GS+IC E K +++ W +KM+E +A++EGL   +    R+ +           + ++LN+   DL +
Subjt:  WNEKEGLGGLGWVVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLNDEEDDLFD

XP_023535970.1 uncharacterized protein LOC111797246 [Cucurbita pepo subsp. pepo]8.4e-0646.15Show/hide
Query:  VVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLND
        VVH S GS+IC   K +KK W I  +EA  ILE L+ I+D +    IP+ +ESD+   II +LN+
Subjt:  VVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLND

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTGGAACGAAAAGGAAGGACTCGGAGGATTAGGCTGGGTGGTGCATGACTCGAATGGATCCACGATCTGCTTTGAAATGAAGAGAATAAAAAAGAATTGGCCGAT
CAAAATGATGGAAGCAGAGGCAATTTTAGAGGGTCTCAATCAGATTATCGATACCTATAAGAGAGATCGCATTCCTTTGGAAGTTGAATCAGATGCTTTGGGCGTGATCA
TCAAAGTGCTGAACGACGAGGAAGACGACCTGTTCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTGGAACGAAAAGGAAGGACTCGGAGGATTAGGCTGGGTGGTGCATGACTCGAATGGATCCACGATCTGCTTTGAAATGAAGAGAATAAAAAAGAATTGGCCGAT
CAAAATGATGGAAGCAGAGGCAATTTTAGAGGGTCTCAATCAGATTATCGATACCTATAAGAGAGATCGCATTCCTTTGGAAGTTGAATCAGATGCTTTGGGCGTGATCA
TCAAAGTGCTGAACGACGAGGAAGACGACCTGTTCGATTAA
Protein sequenceShow/hide protein sequence
MPWNEKEGLGGLGWVVHDSNGSTICFEMKRIKKNWPIKMMEAEAILEGLNQIIDTYKRDRIPLEVESDALGVIIKVLNDEEDDLFD