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Spg036146 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036146
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationscaffold5:41919820..41922165
RNA-Seq ExpressionSpg036146
SyntenySpg036146
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KDP27297.1 hypothetical protein JCGZ_20285 [Jatropha curcas]2.1e-0468.57Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVEQWK
        ++  HFLS+GGILCFVHGLFC  YYVSAT  E+ K
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVEQWK
TYJ98330.1 putative GPI inositol-deacylase C [Cucumis melo var. makuwa]1.2e-0449.18Show/hide
Query:  NLFDNSSGENVDAGDWGVGEQQIKSIMWTYTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        NL   S G N      G            +T  HFLS+GGILCFVHGLFCV YYV+AT  E
Subjt:  NLFDNSSGENVDAGDWGVGEQQIKSIMWTYTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
XP_003597047.1 uncharacterized protein LOC11412768 [Medicago truncatula]2.1e-0482.76Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSAT
        +T  HFLS+GGILCFVHGLFCV+YYVSAT
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSAT
XP_030462338.1 uncharacterized protein LOC115682296 [Syzygium oleosum]1.2e-0478.12Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        +T  HFLS+GGILCFVHGLFCV YYVSAT  E
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
XP_030546359.1 uncharacterized protein LOC115752354 [Rhodamnia argentea]1.2e-0478.12Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        +T  HFLS+GGILCFVHGLFCV YYVSAT  E
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
TrEMBL top hitse value%identityAlignment
A0A067JTU1 Uncharacterized protein1.0e-0468.57Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVEQWK
        ++  HFLS+GGILCFVHGLFC  YYVSAT  E+ K
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVEQWK
A0A0A0LR43 Uncharacterized protein1.3e-0475Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        +T  HFLS+GGILCFVHGLFCV YYV+AT  E
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
A0A5A7SMU9 Putative GPI inositol-deacylase C1.3e-0475Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        +T  HFLS+GGILCFVHGLFCV YYV+AT  E
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
A0A5D3BEV8 Putative GPI inositol-deacylase C5.9e-0549.18Show/hide
Query:  NLFDNSSGENVDAGDWGVGEQQIKSIMWTYTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        NL   S G N      G            +T  HFLS+GGILCFVHGLFCV YYV+AT  E
Subjt:  NLFDNSSGENVDAGDWGVGEQQIKSIMWTYTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
G7IKM8 Transmembrane protein, putative1.0e-0482.76Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSAT
        +T  HFLS+GGILCFVHGLFCV+YYVSAT
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSAT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G32280.1 Protein of unknown function (DUF1218)3.6e-0768.75Show/hide
Query:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
        +T  HFLS+GGILCF+H LFCV YYVSAT  +
Subjt:  YTPSHFLSVGGILCFVHGLFCVTYYVSATVVE
AT4G21310.1 Protein of unknown function (DUF1218)9.9e-0582.61Show/hide
Query:  LSVGGILCFVHGLFCVTYYVSAT
        LS+GGILCFVHGLF V YY+SAT
Subjt:  LSVGGILCFVHGLFCVTYYVSAT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACTGGAGCTGGTGGCTAAATCACTCAAGTTCCGAAGAGCTAAGGATGGCAGCGATTATAATGTGGCAAAGAGCTGCCCGAGTCCCCCCAAATGGTCCCCTCCG
CCAATCAACGTCTGGAAGGTGGATGCTTCATGGGATGAATCCGCGAAGCAAGGGGGCTAGGTTGGCTAAAGCCATCCTTGAAGGGATGAAATTGTTGCATGCCAGTTCCG
ATGGTAACCTGGTGTTGATGATCGAGTCTGACATGCTTCAGATTATCCAATGCTTGAAAGGTGAAGCCGTAGACCTCTCGGAAAACAACAATCTTCTGGAAGACATAGCC
GCTTTGGCCTCTGAATTGGGGAGTGTTTCCTTCGAGCATTGCCCCCTCGAGATGAATGTTGTCGCCCATTCTCTCGCCCGTGTAGCTAGAAGTGATCTGTTTGTTGATTT
TGGCTCCTTTCGCGAGCTCTCCCCTTCTCTTCAACCCATGGGAATTTCTGTTATTTTTTTGGGAGTTCTTCAGCCTCTCGTCTGGAAGAGGTATCGGGTTGTATCGTTTG
GCCTCAACCTTTTCGATAATTCTAGCGGTGAGAATGTTGATGCTGGTGATTGGGGCGTTGGTGAACAACAAATCAAGAGCATCATGTGGACTTATACACCATCACACTTT
CTGTCGGTCGGAGGGATTTTGTGTTTTGTTCATGGCTTGTTTTGTGTTACTTATTACGTTTCTGCCACTGTTGTTGAGCAATGGAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTACTGGAGCTGGTGGCTAAATCACTCAAGTTCCGAAGAGCTAAGGATGGCAGCGATTATAATGTGGCAAAGAGCTGCCCGAGTCCCCCCAAATGGTCCCCTCCG
CCAATCAACGTCTGGAAGGTGGATGCTTCATGGGATGAATCCGCGAAGCAAGGGGGCTAGGTTGGCTAAAGCCATCCTTGAAGGGATGAAATTGTTGCATGCCAGTTCCG
ATGGTAACCTGGTGTTGATGATCGAGTCTGACATGCTTCAGATTATCCAATGCTTGAAAGGTGAAGCCGTAGACCTCTCGGAAAACAACAATCTTCTGGAAGACATAGCC
GCTTTGGCCTCTGAATTGGGGAGTGTTTCCTTCGAGCATTGCCCCCTCGAGATGAATGTTGTCGCCCATTCTCTCGCCCGTGTAGCTAGAAGTGATCTGTTTGTTGATTT
TGGCTCCTTTCGCGAGCTCTCCCCTTCTCTTCAACCCATGGGAATTTCTGTTATTTTTTTGGGAGTTCTTCAGCCTCTCGTCTGGAAGAGGTATCGGGTTGTATCGTTTG
GCCTCAACCTTTTCGATAATTCTAGCGGTGAGAATGTTGATGCTGGTGATTGGGGCGTTGGTGAACAACAAATCAAGAGCATCATGTGGACTTATACACCATCACACTTT
CTGTCGGTCGGAGGGATTTTGTGTTTTGTTCATGGCTTGTTTTGTGTTACTTATTACGTTTCTGCCACTGTTGTTGAGCAATGGAAATTATGA
Protein sequenceShow/hide protein sequence
MDYWSWWLNHSSSEELRMAAIIMWQRAARVPPNGPLRQSTSGRWMLHGMNPRSKGARLAKAILEGMKLLHASSDGNLVLMIESDMLQIIQCLKGEAVDLSENNNLLEDIA
ALASELGSVSFEHCPLEMNVVAHSLARVARSDLFVDFGSFRELSPSLQPMGISVIFLGVLQPLVWKRYRVVSFGLNLFDNSSGENVDAGDWGVGEQQIKSIMWTYTPSHF
LSVGGILCFVHGLFCVTYYVSATVVEQWKL