; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036182 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036182
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S21, chloroplastic-like
Genome locationscaffold5:44539606..44542463
RNA-Seq ExpressionSpg036182
SyntenySpg036182
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152510.2 30S ribosomal protein S21, chloroplastic [Cucumis sativus]4.1e-4468.6Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSS+T FF+ LSISKSS I  +  SVS N   QS P SK  RL A+RG+  SSS EP  + L +   +YN+LITV E ESE+++V RFRRQVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS   +Q  Q+    KNRDE DDNWDFYQVDLPY
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY

XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]1.7e-4568.97Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSS+T FF+ LSISKSS I  +  SVS N  FQS PKSK  RL A+RG+  SSS EP  +S  +   +YNVLITV E ESE+++V RFR QVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_022954830.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]1.4e-4466.67Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL
        AAT+SLT+FF+ LSISK S   R  ESVS NFQ  ++P       A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGIL
Subjt:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL

Query:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        QECKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQEITR+K+ DE DDNW+FYQVDLPYCS
Subjt:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_023542788.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]7.1e-4466.08Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL
        AAT+SLT+FF+ LSISK  P     ESVS NFQ  ++PK      A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGIL
Subjt:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL

Query:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        QECKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQE TR+K+ DE DDNW+FYQVDLPYCS
Subjt:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]1.7e-5375.29Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSSLTKFF+SLSISKSS I  +  SVS N   QS PKSKPARL ATRGS T SS EP  +  G++   YNVLITV E ESE++LV RFRRQVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQS+ E+Q  ++  ++KNRDE DDNWDFYQVDLPYCS
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein2.0e-4468.6Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSS+T FF+ LSISKSS I  +  SVS N   QS P SK  RL A+RG+  SSS EP  + L +   +YN+LITV E ESE+++V RFRRQVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS   +Q  Q+    KNRDE DDNWDFYQVDLPY
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY

A0A1S3AZ70 uncharacterized protein LOC1034841458.2e-4668.97Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSS+T FF+ LSISKSS I  +  SVS N  FQS PKSK  RL A+RG+  SSS EP  +S  +   +YNVLITV E ESE+++V RFR QVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

A0A6J1GTI1 30S ribosomal protein S21, chloroplastic-like6.9e-4566.67Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL
        AAT+SLT+FF+ LSISK S   R  ESVS NFQ  ++P       A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGIL
Subjt:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL

Query:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        QECKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQEITR+K+ DE DDNW+FYQVDLPYCS
Subjt:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

A0A6J1K257 30S ribosomal protein S21, chloroplastic-like1.7e-4368.21Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAA--TRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAG
        AAT+SLT+FF+ LSISK S   R  ESVS N  FQS  K+K ARLAA  TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAG
Subjt:  AATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAA--TRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAG

Query:  ILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        ILQECKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQE TR+K+ +E +DNWDFYQVDLPYCS
Subjt:  ILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

E5GBW8 Structural constituent of ribosome8.2e-4668.97Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA
        MAAAATSS+T FF+ LSISKSS I  +  SVS N  FQS PKSK  RL A+RG+  SSS EP  +S  +   +YNVLITV E ESE+++V RFR QVLRA
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRA

Query:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        GILQECKRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  GILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic7.7e-1749.02Show/hide
Query:  KNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDL
        ++ YNV + VD+ E+EERL+ RFRR+V+RAG++QECKRRR+FEN Q ++KRK REAAKRN +R  RR   +     K+E T+   +++  DNWD  +   
Subjt:  KNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDL

Query:  PY
        P+
Subjt:  PY

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein4.9e-1938.59Show/hide
Query:  AATSSLTKFFTSLSISKSS-----PIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVI---SLGVK-----KNHYNVLITVDEKESEERLV
        AA+ SLT F + +S  KS      P      S + + + ++    +   +  T  + +S S E A +   SL         + YNV + V++ ESEERLV
Subjt:  AATSSLTKFFTSLSISKSS-----PIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVI---SLGVK-----KNHYNVLITVDEKESEERLV

Query:  GRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQE---ITRKKNRDEADDNWDFYQVDLP
         RFRR+V+R G++QECKRRR+FEN Q ++KR+ R+AAKRN+K   RRPQ++  Q++++E    T+ K +DE +DNW+    D+P
Subjt:  GRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQE---ITRKKNRDEADDNWDFYQVDLP

AT5G63300.1 Ribosomal protein S21 family protein1.4e-1347.27Show/hide
Query:  KKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNR-----DEADDNWD
        K ++YNV +   + ESEE+LV  F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RK   RRP  K +  S  EI RK NR     DE DD+W+
Subjt:  KKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNR-----DEADDNWD

Query:  F--YQVDLPY
             +++PY
Subjt:  F--YQVDLPY

AT5G63300.2 Ribosomal protein S21 family protein2.4e-1054.69Show/hide
Query:  KKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        K ++YNV +   + ESEE+LV  F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Subjt:  KKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCTGCAACTTCATCTCTCACGAAGTTCTTCACCTCACTCTCAATCTCGAAATCATCACCAATACGCCGTGATTGTGAATCTGTCTCTTTCAACTTTCAGTT
TCAGTCTCGTCCGAAGTCCAAACCGGCTCGGTTGGCTGCCACCAGGGGCTCTGGTACGTCTTCTTCCCCAGAACCTGCTGTTATCTCCTTAGGCGTCAAGAAAAATCATT
ACAATGTTCTGATCACCGTGGACGAGAAAGAGTCTGAAGAGCGGCTGGTGGGTCGGTTCAGGAGGCAGGTCTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGA
TTTTTTGAAAACAGCCAGGCCAAGCGAAAGAGGAAAGCCAGAGAAGCTGCTAAAAGGAATCGCAAGAGATGGTTCAGGAGGCCTCAATCAAAAGATGAGCAGCAGTCAAA
ACAGGAAATCACTCGGAAGAAGAATAGGGATGAGGCAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCTGCAACTTCATCTCTCACGAAGTTCTTCACCTCACTCTCAATCTCGAAATCATCACCAATACGCCGTGATTGTGAATCTGTCTCTTTCAACTTTCAGTT
TCAGTCTCGTCCGAAGTCCAAACCGGCTCGGTTGGCTGCCACCAGGGGCTCTGGTACGTCTTCTTCCCCAGAACCTGCTGTTATCTCCTTAGGCGTCAAGAAAAATCATT
ACAATGTTCTGATCACCGTGGACGAGAAAGAGTCTGAAGAGCGGCTGGTGGGTCGGTTCAGGAGGCAGGTCTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGA
TTTTTTGAAAACAGCCAGGCCAAGCGAAAGAGGAAAGCCAGAGAAGCTGCTAAAAGGAATCGCAAGAGATGGTTCAGGAGGCCTCAATCAAAAGATGAGCAGCAGTCAAA
ACAGGAAATCACTCGGAAGAAGAATAGGGATGAGGCAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG
Protein sequenceShow/hide protein sequence
MAAAATSSLTKFFTSLSISKSSPIRRDCESVSFNFQFQSRPKSKPARLAATRGSGTSSSPEPAVISLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRR
FFENSQAKRKRKAREAAKRNRKRWFRRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS