CuGenDBv2

Gene ID	Spg036249
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP-dependent helicase ATRX
Genome location	scaffold5:48696107..48698098
RNA-Seq Expression	Spg036249
Synteny	Spg036249
Gene Ontology terms	GO:0000781 - chromosome, telomeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR038718 - SNF2-like, N-terminal domain superfamily IPR044574 - ATPase ARIP4-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020999.1 Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-22

76.62

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V RERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI H L+   DILVCDEAHMIKNTK D+TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

XP_022144469.1 protein CHROMATIN REMODELING 20-like [Momordica charantia]

2.6e-24

80.52

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VTRERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEIYH L+   DILVCDEAHMIKNTK DITQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

XP_022149939.1 protein CHROMATIN REMODELING 20-like [Momordica charantia]

2.6e-24

80.52

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VTRERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEIYH L+   DILVCDEAHMIKNTK DITQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

XP_022937760.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]

1.9e-22

76.62

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V RERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI H L+   DILVCDEAHMIKNTK D+TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

XP_038889289.1 protein CHROMATIN REMODELING 20 [Benincasa hispida]

7.6e-24

80.52

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VTRERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI HIL+   DILVCDEAHMIKNTK DITQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CSD7 protein CHROMATIN REMODELING 20-like

1.3e-24

80.52

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VTRERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEIYH L+   DILVCDEAHMIKNTK DITQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

A0A6J1D8I3 ATP-dependent helicase ATRX

1.3e-24

80.52

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VTRERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEIYH L+   DILVCDEAHMIKNTK DITQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

A0A6J1HLN1 ATP-dependent helicase ATRX

9.0e-23

76.62

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V RERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI H L+   DILVCDEAHMIKNTK D+TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

A0A6J1HNN1 ATP-dependent helicase ATRX

9.0e-23

76.62

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V RERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI H L+   DILVCDEAHMIKNTK D+TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

A0A6J1HQY8 ATP-dependent helicase ATRX

9.0e-23

76.62

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V RERRA+LLAKWRA GGVFLIGYSA  N SLG+HVKDR+M KEI H L+   DILVCDEAHMIKNTK D+TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

SwissProt top hits

e value

%identity

Alignment

F4HW51 Protein CHROMATIN REMODELING 20

5.5e-17

62.34

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V+RERR  LL KWR  GGVFL+GY+   N SLGR VKD    + I + LR   DILVCDEAH+IKNTK D TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

P46100 Transcriptional regulator ATRX

2.5e-06

36.49

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Query:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL
        + R+ +L +W+  GGV +IGY    N + GR+VK R + KEI++        D +VCDE H++KN    +++A+
Subjt:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL

Q61687 Transcriptional regulator ATRX

5.7e-06

34.25

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Query:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYM----DKEIYHILRDILVCDEAHMIKNTKVDITQAL
        + R+ +L +W+  GGV +IGY    N + GR+VK R +    +K +     D +VCDE H++KN    +++A+
Subjt:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYM----DKEIYHILRDILVCDEAHMIKNTKVDITQAL

Q7YQM3 Transcriptional regulator ATRX

2.5e-06

36.49

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Query:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL
        + R+ +L +W+  GGV +IGY    N + GR+VK R + KEI++        D +VCDE H++KN    +++A+
Subjt:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL

Q7YQM4 Transcriptional regulator ATRX

2.5e-06

36.49

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Query:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL
        + R+ +L +W+  GGV +IGY    N + GR+VK R + KEI++        D +VCDE H++KN    +++A+
Subjt:  ERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHIL-----RDILVCDEAHMIKNTKVDITQAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.7e-05

61.9

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Query:  VKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        VKD    + I + LR   DILVCDEAH+IKNTK D TQALK+
Subjt:  VKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein

3.9e-18

62.34

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V+RERR  LL KWR  GGVFL+GY+   N SLGR VKD    + I + LR   DILVCDEAH+IKNTK D TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein

3.9e-18

62.34

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V+RERR  LL KWR  GGVFL+GY+   N SLGR VKD    + I + LR   DILVCDEAH+IKNTK D TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein

3.9e-18

62.34

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Query:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR
        V+RERR  LL KWR  GGVFL+GY+   N SLGR VKD    + I + LR   DILVCDEAH+IKNTK D TQALK+
Subjt:  VTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILR---DILVCDEAHMIKNTKVDITQALKR

Sequences

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CDS sequence

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ATGATTGTCGAGTTTGGAGTCCTAGTCCCTCTGAGGGATGTCACAACTCTTCTTTCTTTGATTGAGGAGTTTGAGTTCAGGTTAGGGAGTAGAGATTGTCGAGTTTGGAG
TCCTAGTCCCTCCGAGGGATTTTCTTGTAAATCATACTTTTGTTCATTGCTAAATCCTCTTCCCCATAACGAGTCTATCTTTTCTAAGCTTTGGAAGGTGAAAGTTTCGA
GTAAGGCGGAGGAAGTCTTGGATCATATTTTATGGAGATGTGATTTTGCTCGTTCAGTGTGGGAGATCTTCTTCACCTCTTTTGGGAGACAACCGTTGGTCTTTCAAGGA
GTGAGGGCGATGATCGAAGAGTTCCTTCTCCATCCGATTTATCACGTAACAAGGGAGAGAAGGGCGAAGTTGCTTGCTAAGTGGAGAGCTACGGGTGGTGTCTTTTTAAT
TGGTTATAGTGCTTTGGGAAATTCTTCACTTGGTAGACATGTCAAGGACCGGTACATGGATAAAGAAATTTACCATATCTTGCGCGATATTCTTGTATGTGATGAGGCCC
ACATGATTAAGAACACCAAGGTTGATATAACCCAAGCATTGAAAAGAGAGGGAAACTTTGGAAGAAGGGTAAAGATTGGTATAGGCTAG

mRNA sequence

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Protein sequence

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MIVEFGVLVPLRDVTTLLSLIEEFEFRLGSRDCRVWSPSPSEGFSCKSYFCSLLNPLPHNESIFSKLWKVKVSSKAEEVLDHILWRCDFARSVWEIFFTSFGRQPLVFQG
VRAMIEEFLLHPIYHVTRERRAKLLAKWRATGGVFLIGYSALGNSSLGRHVKDRYMDKEIYHILRDILVCDEAHMIKNTKVDITQALKREGNFGRRVKIGIG

Spg036249 (gene) of Sponge gourd (cylindrica) v1 genome