; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036270 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036270
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor PCF8-like
Genome locationscaffold5:41279962..41281224
RNA-Seq ExpressionSpg036270
SyntenySpg036270
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]5.1e-2380.28Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE
        +RRLRSS   GKVYTSKG R R+LRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAID LS P ETE
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]3.6e-4566.28Show/hide
Query:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF
        MGSL    D+K A++ RR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE     +  F
Subjt:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF

Query:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S P     VP SSSSSQFQSYPLQNFSQKGN SV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]3.3e-4665.54Show/hide
Query:  MGSLKRSLDEKTAELDRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE
        MGSL    D+ T ++ RR+RRL S +D+G   GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLL NAKSAIDALS P +TE  +CR +
Subjt:  MGSLKRSLDEKTAELDRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE

Query:  SYFSFP---SMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S FS P   S ++S  SSSSSQFQSYPLQNFSQKGN SV  P+I NA+  EFSG +PP   SQSN+G GF  FP WE
Subjt:  SYFSFP---SMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]6.0e-4871.71Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYFSFPSMAASVP-SSSSSQFQS
        +RRLRSS   GKVYTSKGLR RRLRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAIDALS P ETE   R     SFPSMA+SVP SSSSSQF +
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYFSFPSMAASVP-SSSSSQFQS

Query:  YPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        YPL+NF + GN SVLSP+I N +PAEFSG +PP  +SQSN  +G  SFP WE
Subjt:  YPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]8.4e-5068.57Show/hide
Query:  MGSLKRSL---DEKTAELDRRDRRLRSSDSG--GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSET-EGECRN
        MGS + SL   DEKTA+L RRDRRLRSS     GKVYTS+GLR RR RLSAPTAI+FYDVQDRLG DRPTE +DWLL+NAKSAIDALS P ET + E R 
Subjt:  MGSLKRSL---DEKTAELDRRDRRLRSSDSG--GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSET-EGECRN

Query:  ESYFSFPSMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        + + S       VPSSSSSQFQSYPL+NFSQKGN +V SP+I NA+P EFSG +PP   SQSNV TGF SFP WE
Subjt:  ESYFSFPSMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

TrEMBL top hitse value%identityAlignment
A0A0A0KF06 TCP domain-containing protein2.9e-1661.18Show/hide
Query:  RRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS---PPSETEGECRNESYFSFP
        R     D   KVYTS+GLR RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AKSAID LS   PP      C   + FS P
Subjt:  RRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS---PPSETEGECRNESYFSFP

A0A0A0LUP1 TCP domain-containing protein1.6e-4665.54Show/hide
Query:  MGSLKRSLDEKTAELDRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE
        MGSL    D+ T ++ RR+RRL S +D+G   GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLL NAKSAIDALS P +TE  +CR +
Subjt:  MGSLKRSLDEKTAELDRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE

Query:  SYFSFP---SMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S FS P   S ++S  SSSSSQFQSYPLQNFSQKGN SV  P+I NA+  EFSG +PP   SQSN+G GF  FP WE
Subjt:  SYFSFP---SMAASVPSSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A1S3B7T4 transcription factor TCP10-like1.8e-4566.28Show/hide
Query:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF
        MGSL    D+K A++ RR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE     +  F
Subjt:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF

Query:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S P     VP SSSSSQFQSYPLQNFSQKGN SV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A5A7UTZ9 Transcription factor TCP10-like1.8e-4566.28Show/hide
Query:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF
        MGSL    D+K A++ RR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE     +  F
Subjt:  MGSLKRSLDEKTAELDRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYF

Query:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S P     VP SSSSSQFQSYPLQNFSQKGN SV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  SFPSMAASVP-SSSSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A6J1KM30 transcription factor PCF8-like2.9e-4871.71Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYFSFPSMAASVP-SSSSSQFQS
        +RRLRSS   GKVYTSKGLR RRLRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAIDALS P ETE   R     SFPSMA+SVP SSSSSQF +
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYFSFPSMAASVP-SSSSSQFQS

Query:  YPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        YPL+NF + GN SVLSP+I N +PAEFSG +PP  +SQSN  +G  SFP WE
Subjt:  YPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE

SwissProt top hitse value%identityAlignment
A2WM14 Transcription factor PCF51.1e-1570.18Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL
        D   KV T++G R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++NAK AID L
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL

O82277 Transcription factor TCP101.3e-1662.86Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNE
        D   KV+TSKG R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++ AK+AID L     T    R E
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNE

Q8LT05 Transcription factor PCF78.2e-1664.52Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE
        D   KV T++GLR RR+RL+A TAI+FYDVQDRLG+DRP++AVDWL++NAK+AID L   +E
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE

Q8LT07 Transcription factor PCF51.1e-1570.18Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL
        D   KV T++G R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++NAK AID L
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL

Q9MAH8 Transcription factor TCP35.7e-1772.58Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP
        D   KV T+KG R RR+RLSAPTAIQFYDVQDRLGFDRP++AVDWL+  AKSAID L+  PP
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 34.0e-1872.58Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP
        D   KV T+KG R RR+RLSAPTAIQFYDVQDRLGFDRP++AVDWL+  AKSAID L+  PP
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP

AT2G31070.1 TCP domain protein 109.0e-1862.86Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNE
        D   KV+TSKG R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++ AK+AID L     T    R E
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNE

AT3G15030.1 TCP family transcription factor 41.1e-1540.54Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF
        D   KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+  PP       R  +  + P       +++ +Q    P    
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF

Query:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP
         Q+    +   V FN   AE          PPS  S S   T  + FP
Subjt:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP

AT3G15030.2 TCP family transcription factor 41.1e-1540.54Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF
        D   KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+  PP       R  +  + P       +++ +Q    P    
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF

Query:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP
         Q+    +   V FN   AE          PPS  S S   T  + FP
Subjt:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP

AT3G15030.3 TCP family transcription factor 41.1e-1540.54Show/hide
Query:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF
        D   KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+  PP       R  +  + P       +++ +Q    P    
Subjt:  DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PPSETEGECRNESYFSFPSMAASVPSSSSSQFQSYPLQNF

Query:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP
         Q+    +   V FN   AE          PPS  S S   T  + FP
Subjt:  SQKGNFSVLSPVIFNASPAEFSGQE-----PPSSISQSNVGTGFTSFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTGAAGCGTTCCCTTGATGAGAAGACGGCGGAGCTTGACCGGAGAGACCGTCGCCTCCGTTCGAGCGACAGCGGCGGCAAGGTTTACACTTCGAAAGGGCT
CCGAGGAAGGCGGCTCCGGCTGTCGGCTCCGACGGCCATTCAATTCTACGACGTCCAGGATCGCCTTGGCTTCGACCGACCCACTGAGGCCGTCGATTGGCTTCTTCAGA
ATGCCAAATCCGCCATTGATGCACTCTCTCCACCATCAGAAACAGAGGGAGAGTGTAGAAACGAGAGCTATTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCT
TCTTCCTCCCAGTTCCAGAGTTACCCACTTCAGAATTTCTCCCAAAAAGGCAACTTCTCTGTTTTGAGTCCAGTGATTTTTAATGCCTCGCCGGCGGAATTTTCCGGGCA
GGAGCCGCCGTCTTCTATAAGTCAGAGCAATGTCGGAACTGGTTTTACTTCCTTTCCGACGTGGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTGAAGCGTTCCCTTGATGAGAAGACGGCGGAGCTTGACCGGAGAGACCGTCGCCTCCGTTCGAGCGACAGCGGCGGCAAGGTTTACACTTCGAAAGGGCT
CCGAGGAAGGCGGCTCCGGCTGTCGGCTCCGACGGCCATTCAATTCTACGACGTCCAGGATCGCCTTGGCTTCGACCGACCCACTGAGGCCGTCGATTGGCTTCTTCAGA
ATGCCAAATCCGCCATTGATGCACTCTCTCCACCATCAGAAACAGAGGGAGAGTGTAGAAACGAGAGCTATTTCAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCT
TCTTCCTCCCAGTTCCAGAGTTACCCACTTCAGAATTTCTCCCAAAAAGGCAACTTCTCTGTTTTGAGTCCAGTGATTTTTAATGCCTCGCCGGCGGAATTTTCCGGGCA
GGAGCCGCCGTCTTCTATAAGTCAGAGCAATGTCGGAACTGGTTTTACTTCCTTTCCGACGTGGGAGTAG
Protein sequenceShow/hide protein sequence
MGSLKRSLDEKTAELDRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYFSFPSMAASVPSS
SSSQFQSYPLQNFSQKGNFSVLSPVIFNASPAEFSGQEPPSSISQSNVGTGFTSFPTWE