; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036301 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036301
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear pore complex protein NUP1-like
Genome locationscaffold5:48071099..48075175
RNA-Seq ExpressionSpg036301
SyntenySpg036301
Gene Ontology termsGO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0071763 - nuclear membrane organization (biological process)
GO:0005635 - nuclear envelope (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019990.1 Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-0773.81Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGGFEVEFINTM
        VE+MM+ETKFDPADFPKVYLTA IEEDINA GG     +N M
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGGFEVEFINTM

XP_023520186.1 uncharacterized protein LOC111783486 [Cucurbita pepo subsp. pepo]1.6e-0687.88Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        VE+MM+ETKFDPADFPKVYLTA IEEDINA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

XP_038884353.1 nuclear pore complex protein NUP1-like isoform X1 [Benincasa hispida]7.0e-0772.55Show/hide
Query:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS
        DQGKSDVPV    S I SFP  SSPSITANVIG ES +RPEKI SSEV K+
Subjt:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS

XP_038884354.1 nuclear pore complex protein NUP1-like isoform X2 [Benincasa hispida]7.0e-0772.55Show/hide
Query:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS
        DQGKSDVPV    S I SFP  SSPSITANVIG ES +RPEKI SSEV K+
Subjt:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS

XP_038884355.1 nuclear pore complex protein NUP1-like isoform X3 [Benincasa hispida]7.0e-0772.55Show/hide
Query:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS
        DQGKSDVPV    S I SFP  SSPSITANVIG ES +RPEKI SSEV K+
Subjt:  DQGKSDVPV----SLISSFPAASSPSITANVIGLESTLRPEKIVSSEVKKS

TrEMBL top hitse value%identityAlignment
A0A5D3BI32 Uncharacterized protein1.7e-0684.85Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        VE+MM+ETKFDPADFPKVYLTA IEED+NA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

A0A6J1E7N6 uncharacterized protein LOC1114313901.7e-0684.85Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        VE+MM+ETKFDPADFPKVYLTA IEED+NA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

A0A6J1GSY9 uncharacterized protein LOC1114566827.6e-0784.85Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        +E+MM+ETKFDPADFPKVYLTA IEEDINA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

A0A6J1K4A0 uncharacterized protein LOC1114899567.6e-0784.85Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        +E+MM+ETKFDPADFPKVYLTA IEEDINA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

A0A6J1KK07 uncharacterized protein LOC1114953037.6e-0787.88Show/hide
Query:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        VE+MM+ETKFDPADFPKVYLTA IEEDINA GG
Subjt:  VEEMMEETKFDPADFPKVYLTATIEEDINAHGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08060.1 unknown protein3.1e-0555.88Show/hide
Query:  MVEEMMEETKFDPADFPKVYLTATIEEDINAHGG
        +V+ M E+  FD +DFPKVYLT T+EED++  GG
Subjt:  MVEEMMEETKFDPADFPKVYLTATIEEDINAHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTGGAGGAGATGATGGAGGAGACCAAATTCGACCCTGCTGATTTCCCCAAGGTTTATCTCACTGCCACGATCGAGGAGGATATTAATGCCCATGGAGGGTTCGA
AGTTGAGTTTATTAATACCATGTGCATTGTTTTGCCATTTTGTGCCTGGCCTCCCCTCGTCCTCCCAGAGGCAGTCTGGTTCCATCTTGTTTACACAAATGGTAGGAAAG
CAACAATTGACCAAGGAAAATCTGATGTTCCTGTGAGCCTCATCTCTTCCTTTCCAGCAGCATCTTCACCTAGCATTACAGCCAACGTGATCGGCCTTGAATCAACCTTG
AGACCTGAAAAAATTGTTTCATCTGAGGTTAAGAAAAGCCACTATTCCTGCAAATGCTGCTACGGAAAATGTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTGGAGGAGATGATGGAGGAGACCAAATTCGACCCTGCTGATTTCCCCAAGGTTTATCTCACTGCCACGATCGAGGAGGATATTAATGCCCATGGAGGGTTCGA
AGTTGAGTTTATTAATACCATGTGCATTGTTTTGCCATTTTGTGCCTGGCCTCCCCTCGTCCTCCCAGAGGCAGTCTGGTTCCATCTTGTTTACACAAATGGTAGGAAAG
CAACAATTGACCAAGGAAAATCTGATGTTCCTGTGAGCCTCATCTCTTCCTTTCCAGCAGCATCTTCACCTAGCATTACAGCCAACGTGATCGGCCTTGAATCAACCTTG
AGACCTGAAAAAATTGTTTCATCTGAGGTTAAGAAAAGCCACTATTCCTGCAAATGCTGCTACGGAAAATGTAAATAA
Protein sequenceShow/hide protein sequence
MMVEEMMEETKFDPADFPKVYLTATIEEDINAHGGFEVEFINTMCIVLPFCAWPPLVLPEAVWFHLVYTNGRKATIDQGKSDVPVSLISSFPAASSPSITANVIGLESTL
RPEKIVSSEVKKSHYSCKCCYGKCK