; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg036341 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036341
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionHIG1 domain-containing protein
Genome locationscaffold5:45380408..45382034
RNA-Seq ExpressionSpg036341
SyntenySpg036341
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573043.1 RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]8.2e-3596.34Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]6.3e-3593.9Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]8.2e-3593.9Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]8.2e-3596.34Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]1.1e-36100Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein3.1e-3593.9Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL484.0e-3593.9Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL484.0e-3593.9Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like4.0e-3596.34Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like1.2e-3496.34Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS E NLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B1.5e-0744.29Show/hide
Query:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        S      E F+ K R  NP+VP+G L TA VLT GL  F QGNSQ  +++M  ++  QG T+ A+++G A
Subjt:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial7.5e-0744.83Show/hide
Query:  PLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP
        PLVP+G L T G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP

Q7X843 RING-H2 finger protein ATL483.4e-3180Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial2.8e-0953.97Show/hide
Query:  EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VP+G L TA  LT GL SF +GNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A3.4e-0744.29Show/hide
Query:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA
        S      E F+ K R  NP+VP+G L TA  LT GL  F +G S   Q++MR R+  QG T VA+++G A
Subjt:  SEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein2.4e-3280Show/hide
Query:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCAGAGGAACCCAATTTGGACGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTTTGGTCCCTGTCGGTGCACTTGTCACTGCTGGAGTTTTGACTGCTGG
ATTAATCAGCTTTAGACAAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACT
ATGGAGAGAATCCCTGGAGATCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCAGAGGAACCCAATTTGGACGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTTTGGTCCCTGTCGGTGCACTTGTCACTGCTGGAGTTTTGACTGCTGG
ATTAATCAGCTTTAGACAAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACT
ATGGAGAGAATCCCTGGAGATCGAGTTAA
Protein sequenceShow/hide protein sequence
MSSEEPNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS