CuGenDBv2

Gene ID	Spg036464
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	scaffold5:43913720..43914830
RNA-Seq Expression	Spg036464
Synteny	Spg036464
Gene Ontology terms	GO:0110165 - cellular anatomical structure (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

9.2e-14

57.28

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAVNKGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

9.2e-14

57.28

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAVNKGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

XP_008440305.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo]

3.5e-13

56.31

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAV+KGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

2.7e-13

56.31

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLK ++AAAVNKGVTEARARIFGH+ LN                                 +I A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

9.2e-14

57.28

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAVNKGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

4.4e-14

57.28

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAVNKGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial

1.7e-13

56.31

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAV+KGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

A0A5A7UM66 28S ribosomal protein S33

1.7e-13

56.31

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLKS++AAAV+KGVTEARARIFGHI LN                                 ++ A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

2.9e-13

55.34

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLK ++AAA+NKGVTEARARIFGH+ LN                                 +I A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

1.3e-13

56.31

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK
        MATNSLK ++AAAVNKGVTEARARIFGH+ LN                                 +I A     RLSKLEMLKRRGKGPPKKGQGRRAAK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHICLNIL-------------------------------IISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAK

Query:  RNK
        RNK
Subjt:  RNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

3.1e-12

48.04

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGH------------ICLNILI------------------ISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS++++AV +GVTEARARIFGH            I    LI                  + A     R+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGH------------ICLNILI------------------ISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATATTTGTCTCAATATTCTGATTATATC
TGCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAAGGACCACCTAAGAAGGGCCAAGGCCGGCGTGCGGCCAAGCGCAATAAGTAG

mRNA sequence

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Protein sequence

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MATNSLKSIVAAAVNKGVTEARARIFGHICLNILIISAIYFARRLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Spg036464 (gene) of Sponge gourd (cylindrica) v1 genome