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Spg036658 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg036658
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationscaffold5:46253837..46257202
RNA-Seq ExpressionSpg036658
SyntenySpg036658
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3452763.1 unnamed protein product [Digitaria exilis]1.1e-0945.13Show/hide
Query:  PPSFFPSSIVAAAA-------RPIPTSSSGSFLKFDSWI-LSLNQSATSVEKC---------------KIG----------VDCGMENTLKQGDVIQCRE
        PP  F S+  A AA       RP+PT ++G+    D WI  S + SATS E C               +IG          + CG ENTLK GDVIQCRE
Subjt:  PPSFFPSSIVAAAA-------RPIPTSSSGSFLKFDSWI-LSLNQSATSVEKC---------------KIG----------VDCGMENTLKQGDVIQCRE

Query:  CGYRILYKKRTRR
        CGY ILYKKRTRR
Subjt:  CGYRILYKKRTRR

KAG6572995.1 DNA-directed RNA polymerases II, IV and V subunit 12, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0975.51Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRIIGEALSSSLALPLFLLW
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+ ++   SL L   L W
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRIIGEALSSSLALPLFLLW

POO03436.1 RNA polymerase archaeal subunit P/eukaryotic subunit RPABC [Trema orientale]1.8e-0980.49Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRIIGEALSSSL
        DCGMENTLK GDVIQCRECGYRILYKKRTRR I +  ++SL
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRIIGEALSSSL

XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]1.4e-0996.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

XP_023520249.1 DNA-directed RNA polymerases II, IV and V subunit 12-like [Cucurbita pepo subsp. pepo]1.4e-0996.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

TrEMBL top hitse value%identityAlignment
A0A0A0LQM4 Uncharacterized protein6.7e-1096.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 126.7e-1096.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 126.7e-1096.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 126.7e-1096.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

A0A7N0ZTZ3 Uncharacterized protein6.7e-1096.97Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCGMENTLKQGDVIQCRECGYRILYKKRTRRI+
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

SwissProt top hitse value%identityAlignment
P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC45.7e-0660.61Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        +C  EN +K  D I+CRECGYRI+YKKRT+R++
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC45.7e-0660.61Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        +C  EN +K  D I+CRECGYRI+YKKRT+R++
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC45.7e-0660.61Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        +C  EN +K  D I+CRECGYRI+YKKRT+R++
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

Q9C8M4 DNA-directed RNA polymerase subunit 12-like protein5.1e-0778.57Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKR
        DCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 123.4e-1187.88Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCG ENTLK GDVIQCRECGYRILYKKRTRR++
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit3.6e-0878.57Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKR
        DCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit2.4e-1287.88Show/hide
Query:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII
        DCG ENTLK GDVIQCRECGYRILYKKRTRR++
Subjt:  DCGMENTLKQGDVIQCRECGYRILYKKRTRRII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTCCATCTTTCTTTCCCTCTTCCATCGTTGCCGCAGCCGCACGTCCGATTCCCACCAGCAGCTCAGGAAGTTTTTTGAAGTTTGACTCATGGATCCTCAGCCTGAACCA
GTCAGCTACATCTGTGGAGAAGTGTAAAATTGGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGAGATGTTATACAGTGTCGAGAGTGTGGTTATCGTATTCTCT
ACAAGAAGCGCACCCGTCGCATTATTGGAGAAGCCCTTTCTTCTAGTTTAGCTCTGCCATTGTTTTTGTTATGGTTCCTTTCCTTTGATGTGGATTGGTGTTTATTGTTC
AGTACGAAGCCCGTTGAAATGCTTATTCTGGCGATGGACTATTAG
mRNA sequenceShow/hide mRNA sequence
CCTCCATCTTTCTTTCCCTCTTCCATCGTTGCCGCAGCCGCACGTCCGATTCCCACCAGCAGCTCAGGAAGTTTTTTGAAGTTTGACTCATGGATCCTCAGCCTGAACCA
GTCAGCTACATCTGTGGAGAAGTGTAAAATTGGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGAGATGTTATACAGTGTCGAGAGTGTGGTTATCGTATTCTCT
ACAAGAAGCGCACCCGTCGCATTATTGGAGAAGCCCTTTCTTCTAGTTTAGCTCTGCCATTGTTTTTGTTATGGTTCCTTTCCTTTGATGTGGATTGGTGTTTATTGTTC
AGTACGAAGCCCGTTGAAATGCTTATTCTGGCGATGGACTATTAG
Protein sequenceShow/hide protein sequence
PPSFFPSSIVAAAARPIPTSSSGSFLKFDSWILSLNQSATSVEKCKIGVDCGMENTLKQGDVIQCRECGYRILYKKRTRRIIGEALSSSLALPLFLLWFLSFDVDWCLLF
STKPVEMLILAMDY